View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_13 (Length: 393)
Name: NF3523_high_13
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_13 |
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| [»] scaffold0602 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 203 - 373
Target Start/End: Complemental strand, 8636894 - 8636729
Alignment:
| Q |
203 |
tgttggatagtttgccaaaccttaacaagttttctagatgtaagtcccgtattaaccttccattcttggtggaatggaagtagaggtaaatgaatgtcct |
302 |
Q |
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| T |
8636894 |
tgttggaaagtttgccaaaacttaacaagttttctagctgtaagtcccgcatttaccttccattgttggtggaa-----gtagaggtaaatgaatgtcct |
8636800 |
T |
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| Q |
303 |
ctcctcaagattttctctgagggaatgccgagcagtcccaatcttttgaacattaaattaggagaggtgta |
373 |
Q |
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| T |
8636799 |
ctcctcgagattttctctgagggaatgccgagcactcccaatcttttggacatcaaaagaggagagttgta |
8636729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 8621979 - 8622134
Alignment:
| Q |
54 |
gcttaatatatttggagattaccaaactgcaatggactgacaagtttaattatttcttttatggggagaagtcttggcaaacttgaagtgaagaaggtga |
153 |
Q |
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| T |
8621979 |
gcttaatatctttggagattaccaa-ctgcaatggactgataagtttaattacatcttccatggggaaaagtcttggcaagcttgaagtgatgaaggtga |
8622077 |
T |
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| Q |
154 |
aatgttgtaactcacttgaagcaatcattacagcagaggacaatgttgatgttggat |
210 |
Q |
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| T |
8622078 |
aaggttgtaactcacttgaagaaatcattacagtagagaacaatgttgatgttggat |
8622134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 8637071 - 8636916
Alignment:
| Q |
54 |
gcttaatatatttggagattaccaaactgcaatggactgacaagtttaattatttcttttatggggagaagtcttggcaaacttgaagtgaagaaggtga |
153 |
Q |
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| T |
8637071 |
gcttaatatctttggagattaccaa-ctgcaatggactgataagtttaattacatcttctatgggggaaattcttggcaagcttgaagtgatgaaggtga |
8636973 |
T |
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| Q |
154 |
aatgttgtaactcacttgaagcaatcattacagcagaggacaatgttgatgttggat |
210 |
Q |
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| T |
8636972 |
aaggttgtaactcacttgaagcaatcattacagcagaggagaatcttgattttggat |
8636916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 373
Target Start/End: Original strand, 8622159 - 8622324
Alignment:
| Q |
203 |
tgttggatagtttgccaaaccttaacaagttttctagatgtaagtcccgtattaaccttccattcttggtggaatggaagtagaggtaaatgaatgtcct |
302 |
Q |
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| T |
8622159 |
tgttggatagtttgccaaaccttaacaagttttctagctctaagtcccgcatttaccttccattgttggtggag-----gtagaggtaagtgaatgtcct |
8622253 |
T |
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| Q |
303 |
ctcctcaagattttctctgagggaatgccgagcagtcccaatcttttgaacattaaattaggagaggtgta |
373 |
Q |
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| T |
8622254 |
ctcctcaagattttctccgagggaatgctgagcactcccaatctttgggacatcaaaagaggagagttgta |
8622324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 37290464 - 37290315
Alignment:
| Q |
19 |
attgtcccagtcttacaaatttgattccttcatatgctt-------------aatatatttggagattaccaaactgcaatggactgacaagtttaatta |
105 |
Q |
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| T |
37290464 |
attgtcccagtcttacaaatttgattccttcatatgcttcttttaattgcttaatatatttggagattaccaa-ctgcaatggactgacaagtttaatta |
37290366 |
T |
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| Q |
106 |
tttcttttatggggagaagtcttggcaaacttgaagtgaagaaggtgaaat |
156 |
Q |
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| T |
37290365 |
tttcttctatggggagaagtcttggcaaacttgaagtgaagaaggtgaaat |
37290315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 2468 - 2313
Alignment:
| Q |
54 |
gcttaatatatttggagattaccaaactgcaatggactgacaagtttaattatttcttttatggggagaagtcttggcaaacttgaagtgaagaaggtga |
153 |
Q |
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| T |
2468 |
gcttaatatctttggagattaccaa-ctgcaatggactgataagtttaattacatcttctatgggggaaattcttggcaagcttgaagtgatgaaggtga |
2370 |
T |
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| Q |
154 |
aatgttgtaactcacttgaagcaatcattacagcagaggacaatgttgatgttggat |
210 |
Q |
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| T |
2369 |
aaggttgtaactcacttgaagcaatcattacagcagaggagaatcttgattttggat |
2313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 203 - 373
Target Start/End: Complemental strand, 2288 - 2122
Alignment:
| Q |
203 |
tgttggatagtttgccaaa-ccttaacaagttttctagatgtaagtcccgtattaaccttccattcttggtggaatggaagtagaggtaaatgaatgtcc |
301 |
Q |
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||||||| ||||||||||| |||||||||||||||||| | ||||||||| ||| |||||||||| |||||||| |||||||||| ||||||||| |
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| T |
2288 |
tgttggaaagtttgccaaaaccttaacaagttttctagctctaagtcccgcatttaccttccattgttggtggag-----gtagaggtaagtgaatgtcc |
2194 |
T |
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| Q |
302 |
tctcctcaagattttctctgagggaatgccgagcagtcccaatcttttgaacattaaattaggagaggtgta |
373 |
Q |
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| T |
2193 |
tctcctcaagattttctccgagggaatgctgagcactcccaatctttgggacatcaaaagaggagagttgta |
2122 |
T |
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