View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_14 (Length: 363)
Name: NF3523_high_14
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 9493300 - 9493632
Alignment:
| Q |
20 |
cttcaattcttatgcttcttttttagtgtaaattactacactaaccttgcttcaaatgatgttcaatgcatgaaatcaaggtgtaatcacaaagatgctc |
119 |
Q |
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| T |
9493300 |
cttcaattcttatgcttcttttttagtgtaaattactacactaaccttgcttcaaatgatgttcaatgcatgaaaacaaggtgtaatcacaaagatgctc |
9493399 |
T |
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| Q |
120 |
caactattcaatacccttttagactccaaaacattcaaccacaaaattgtggcaaaattgggtatgatctttcatgcaatgagaatcaacaaaccatact |
219 |
Q |
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| T |
9493400 |
caactattcaatacccttttagactccaaaacattcaaccacaaaattgtggcaaaattgggtatgatctttcatgctatgagaatcaacaaaccatact |
9493499 |
T |
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| Q |
220 |
aaaattgccaaattcaatcaattttattgtcaacaaaattgattacaagtctcaaacaattcatgtaacatacccaaatggatgtcttccaaaactcctt |
319 |
Q |
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| T |
9493500 |
aaaattgccaaattcaatcaattttattgtcaacaaaattgattacaagtctcaaacaattcatgtaacatacccaaatggatgtcttccaaaactcctt |
9493599 |
T |
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| Q |
320 |
tcaaatcttaatgtaacatccacaccttttcat |
352 |
Q |
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| T |
9493600 |
tcaaatcttaatgtaacatccacaccttttcat |
9493632 |
T |
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