View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_17 (Length: 336)
Name: NF3523_high_17
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 122 - 289
Target Start/End: Original strand, 20454897 - 20455064
Alignment:
| Q |
122 |
ttactcaaattaaaaacattaatccaacccatgggcttataaatcaactagactagatgagtcttacttctatatatagccgttggcgcttccgaagaaa |
221 |
Q |
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| T |
20454897 |
ttactcaaattaaaaacattaatccaacccatgggcttataaatcaactagactagatgagtcttacttctatatatagccgttggcgcttccgaagaaa |
20454996 |
T |
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| Q |
222 |
tcaacttcgctctcaaactgaaaccctaatccgtacagttcctattcctctgctatatataatctctc |
289 |
Q |
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| T |
20454997 |
tcaacttcgctctcaaactgaaaccctaattcatacaattcctattcctctgctatatataatctctc |
20455064 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 1630923 - 1630956
Alignment:
| Q |
269 |
ctctgctatatataatctctccctcgtttctctc |
302 |
Q |
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| T |
1630923 |
ctctgctatatataatctctccctcatttctctc |
1630956 |
T |
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