View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_18 (Length: 315)
Name: NF3523_high_18
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 24648997 - 24649276
Alignment:
| Q |
1 |
attattgggagattgtacaaaaattaaaaggcaactcaagagacattctagcatgagaataaggtatattgtatgtggnnnnnnnnccaagtgtaagaac |
100 |
Q |
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| T |
24648997 |
attattgggtgattgtacgaaaattaaaaggcaactcaagaaacattctagcatgagaataaggtatattgt--gtggttttttt-ccaagtgtaagaac |
24649093 |
T |
|
| Q |
101 |
tcgttactccctgaatcgggtttttaaacactctagattctgattctcatacactaagtggcttcactcatttacaagtctacatatgtttttaatgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649094 |
tcgttactccctgaatcgggtttttaaacactctagattctgattctcatacactaagtggcttcactcatttacaagtctacatatgtttttaatgcac |
24649193 |
T |
|
| Q |
201 |
ataaacattaaaggatacatgacgaaacgttgtggacaatcatcatcaactttacatatagattttgctaaaataagaaaatg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649194 |
ataaacattaaaggatacatgacgaaacgttgtggacaatcatcatcaactttacatatagattttgctaaaataagaaaatg |
24649276 |
T |
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