View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_23 (Length: 264)
Name: NF3523_high_23
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 24648624 - 24648869
Alignment:
| Q |
14 |
gaagacgaagaaatagaaaaaagaattatttgtagatagtatactattagatgcaatagacccacacaatctaatggtttcctttttgacaaaaagatcc |
113 |
Q |
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| T |
24648624 |
gaagacgaagagatagaaaaaagaattatttgtagatagtatactattagatgcaatagacccacacaatctaatggtttcctttttgacaaaaagatcc |
24648723 |
T |
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| Q |
114 |
aagggttaaaattaaaaatattaatgagatttttgtttgtccatctaagata---tgggttaaccccttgacagaagggacaaaattgtgtaacggatgc |
210 |
Q |
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| T |
24648724 |
aagggttaaaattgaaaatattaatgagatttttctttgtccatctaagatagccggggttaaccccttgacagaagggacaaaattgtgtaacggatgc |
24648823 |
T |
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| Q |
211 |
atatttaaaggatctaaatagaccaaaaattaattatgggatcaaa |
256 |
Q |
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| T |
24648824 |
atatttaaaggatctaaacagaccaaaaattaattatgggatcaaa |
24648869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 22165288 - 22165158
Alignment:
| Q |
9 |
gagatgaagacgaagaaatagaaaaaagaattatttgtagatagtatactattagatgcaatagacccacacaatctaatggtttcctttttgacaaaaa |
108 |
Q |
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| T |
22165288 |
gagaagaagatgaagaaatcgaaaaa-gaattagttctagatggcatactgctagatacaatagacatatagaatctaatggttttctttgtgacaaaaa |
22165190 |
T |
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| Q |
109 |
gatccaagggttaaaattaaaaatattaatga |
140 |
Q |
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| T |
22165189 |
gatccaacgattacaattataaaaattaatga |
22165158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 22165110 - 22165050
Alignment:
| Q |
168 |
ggttaaccccttgacagaagggacaaaattgtgtaacggatgcatatttaaaggatctaaa |
228 |
Q |
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| T |
22165110 |
ggttagcctcttgacggaagggcccaaactgtgtaacagatgcatatttaaaggacctaaa |
22165050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 12826031 - 12825947
Alignment:
| Q |
47 |
agatagtatactattagatgcaatagacccacacaatctaatggt-ttcctttttgacaaaaagatccaagggttaaaattaaaaa |
131 |
Q |
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| T |
12826031 |
agatggtatactattagatt-aatagacccacaaaatctaatggtcttttttttttacaaatagatccaacggttacaattaaaaa |
12825947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 2131031 - 2130955
Alignment:
| Q |
67 |
caatagacccacacaatctaatggtttcctttttgacaaaaagatccaagggttaaaattaaaaatattaatgagat |
143 |
Q |
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| T |
2131031 |
caatagaccttcaaaatcaaatggtttcatttttgacaaaaaaatcaaatggttagaattagaaagatttatgagat |
2130955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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