View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_27 (Length: 251)
Name: NF3523_high_27
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7010110 - 7009877
Alignment:
| Q |
1 |
ccaaattctacaaaatgctataaaaatagcatagactatatatttactgtatatgtaaagtggcataaagtggcatcatgagatattttaggaataagta |
100 |
Q |
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| T |
7010110 |
ccaaattctgcaaaatgctataaaaatagcatagactatatatttactatatatgtaaagtggcataaagtggcatcatgagatattttaggaataagta |
7010011 |
T |
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| Q |
101 |
tatacaaaaaagcggcgtcatgaaaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgttgtataatacttaaactctaaattaaaaaggaa |
200 |
Q |
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| T |
7010010 |
tatacaaaaaagtggtgtcatgaaaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgatgtataatacttaaactctaatttaaaaaggaa |
7009911 |
T |
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| Q |
201 |
gaaagaaaggattgcaatgtaaatagattaacct |
234 |
Q |
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| T |
7009910 |
gaaagaaaggattgcaatgtaaatagattaacct |
7009877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 7006890 - 7006783
Alignment:
| Q |
124 |
aaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgttgtataatacttaaactctaaattaaaaaggaagaaagaaaggattgcaatgtaaa |
223 |
Q |
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||||||| |||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| || ||||||| |||| |||||||||||| |
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| T |
7006890 |
aaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaagaa-gaagaaaaaaag--ttgcaatgtaaa |
7006794 |
T |
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| Q |
224 |
tagattaacct |
234 |
Q |
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| T |
7006793 |
tagattaacct |
7006783 |
T |
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