View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3523_high_28 (Length: 251)

Name: NF3523_high_28
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3523_high_28
NF3523_high_28
[»] chr4 (2 HSPs)
chr4 (1-236)||(8321521-8321756)
chr4 (8-178)||(25229719-25229891)
[»] chr6 (1 HSPs)
chr6 (10-211)||(23905603-23905806)
[»] chr7 (2 HSPs)
chr7 (35-184)||(27223322-27223472)
chr7 (37-184)||(11728443-11728588)
[»] scaffold0008 (1 HSPs)
scaffold0008 (35-191)||(264233-264390)
[»] chr2 (3 HSPs)
chr2 (7-150)||(19993810-19993955)
chr2 (37-93)||(21506193-21506249)
chr2 (153-194)||(24226256-24226297)
[»] chr1 (6 HSPs)
chr1 (7-194)||(17621926-17622115)
chr1 (22-123)||(12085457-12085559)
chr1 (34-92)||(26330487-26330545)
chr1 (6-123)||(26645949-26646066)
chr1 (36-93)||(15984112-15984169)
chr1 (35-76)||(20185911-20185952)
[»] chr3 (2 HSPs)
chr3 (139-189)||(15487624-15487674)
chr3 (42-123)||(21806638-21806720)
[»] scaffold0021 (1 HSPs)
scaffold0021 (11-114)||(156500-156605)
[»] chr5 (1 HSPs)
chr5 (37-123)||(33699841-33699928)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8321521 - 8321756
Alignment:
Q  1 atgtggcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacctaa 100  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8321521 atgttgcacactttctcttcatttctggtctccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacctaa 8321620  T
Q  101 agatgattaatgaaactttacaactcattacataattattttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacatttctctcattctc 200  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8321621 agataattaatgaaactttacaactcattacatgattattttgtgatcatagtcttatcaatgatcaatttgatctcacaatgacatttctctcattctc 8321720  T
Q  201 accaagttaaatctcataacatttcttcaatctttt 236  Q
    | ||||||||||||||||||||||||||||||||||    
T  8321721 atcaagttaaatctcataacatttcttcaatctttt 8321756  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 25229891 - 25229719
Alignment:
Q  8 acactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatga 106  Q
    ||||||| ||||| |||||||| |   |||||||||||||| | || |||||||| |  ||||||||| || | |||||||||| ||| ||||||||  |    
T  25229891 acactttgtcttcttttctggtctagctgaccttacaagttctagataacctcttcatgctttagctaccacataatccaccttcatatcctaaagagaa 25229792  T
Q  107 ttaatgaaactttacaactcattacataa-ttattttgtgatcttagtcttatcaatgatcaatttgatctca 178  Q
    ||| ||||||||||||| | |||||| || || |||| |||||||  |||||  |||||||| ||||||||||    
T  25229791 ttagtgaaactttacaattgattacaaaatttgttttttgatcttgatcttaagaatgatcattttgatctca 25229719  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 23905806 - 23905603
Alignment:
Q  10 actttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaagatgatt 108  Q
    |||||||||| ||||||||| | |  |||| || ||||||||||||| ||||| |||||||| ||| || |||||||  ||||||||| |||||| ||||    
T  23905806 actttctcttaatttctggtttacccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggatt 23905707  T
Q  109 aatgaaactttacaactcattacataattattttgtgatcttagtcttatca-atgatcaatttgatctcacaatgacatttctctcattctcaccaagt 207  Q
    | |||| ||||| |||| ||||||||||| ||||||||||||  ||||| ||  ||||||||||||||||||||| || ||| |||| ||||| | ||||    
T  23905706 agtgaagctttagaactgattacataatttttttgtgatcttgctcttaacatttgatcaatttgatctcacaataacctttatctctttctctctaagt 23905607  T
Q  208 taaa 211  Q
    ||||    
T  23905606 taaa 23905603  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 27223472 - 27223322
Alignment:
Q  35 tgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacat 133  Q
    ||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||| | |||| | ||||| |||| |||| ||||| | ||||     
T  27223472 tgaccgtacaagttttagacaacctctttagactttagataccacacaatccacctttatagcgtaaataagattagtgaagctttgcaactgaatacac 27223373  T
Q  134 aattattttgtgatcttagtcttatcaatgatcaatttgatctcacaatga 184  Q
    ||||  ||| ||||||   | ||| |||||||||||||||||||| |||||    
T  27223372 aattcctttatgatctagattttaacaatgatcaatttgatctcaaaatga 27223322  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 11728443 - 11728588
Alignment:
Q  37 accttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacataa 135  Q
    |||||| ||| ||||||||||   |||| ||| ||| || || |||||||||||||||| |||||||| |||||||||| ||||||||||  ||||| ||    
T  11728443 accttagaagatttggacaac---tttatactctagttaccacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaa 11728539  T
Q  136 ttattttgtgatcttagtcttatcaatgatcaatttgatctcacaatga 184  Q
    || |||||||||| |  |  || |||||||||||||||| |||||||||    
T  11728540 ttgttttgtgatcgtgattataacaatgatcaatttgatatcacaatga 11728588  T

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Target: scaffold0008 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 264233 - 264390
Alignment:
Q  35 tgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacat 133  Q
    |||||||||||||||  |  ||||||||||||  ||||||| || ||||||| | |||||| |||||||| ||||| ||||  |||||||||  | |||     
T  264233 tgaccttacaagtttaagttaacctctttagaacttagctaccacacaatccgcatttataacctaaagaggattagtgaagttttacaactattaacac 264332  T
Q  134 aattattttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacatttct 191  Q
    |||| ||||||||||||  ||||| || ||||||| | ||| |||||||||| |||||    
T  264333 aattgttttgtgatcttgatcttaacagtgatcaaatggatatcacaatgacctttct 264390  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 19993810 - 19993955
Alignment:
Q  7 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 105  Q
    |||||||||||||| |||||||| | | | ||  |||||| ||| ||||||||||| ||| |||||||| || |||||||||||| ||| |||||||| |    
T  19993810 cacactttctcttcttttctggtctacctaacaatacaagatttagacaacctcttcagattttagctaccacacaatccaccttaataccctaaagagg 19993909  T
Q  106 attaatgaaactttacaactcattacataattatt-ttgtgatctt 150  Q
    |||| |||| ||||||| || |||| | |||| || ||||||||||    
T  19993910 attagtgaagctttacatcttattatacaattgttcttgtgatctt 19993955  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 21506193 - 21506249
Alignment:
Q  37 accttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 93  Q
    |||||||| |||||| |||||||||||||||||| || | || ||||||||||||||    
T  21506193 accttacatgttttgcacaacctctttagacttttgcaaccacacaatccaccttta 21506249  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 24226297 - 24226256
Alignment:
Q  153 tcttatcaatgatcaatttgatctcacaatgacatttctctc 194  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  24226297 tcttaacaatgattaatttgatctcacaatgacctttctctc 24226256  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 17622115 - 17621926
Alignment:
Q  7 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 105  Q
    ||||||||||| |||||||| || | ||| ||| |||||||||||  || ||| ||  |||||||| || || |||||||||||||||| | |||||| |    
T  17622115 cacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcggactttagttaccacacaatccacctttatagcataaagagg 17622016  T
Q  106 attaatgaaactttacaactcattacataattatt-ttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacatttctctc 194  Q
    |||  |||| |||||||| |  ||||| |||| || ||||||| |   |||||||| |||||||||| ||||||||||||| | ||||||    
T  17622015 attggtgaagctttacaaatgcttacacaattgttcttgtgatttcgatcttatcattgatcaatttcatctcacaatgacctctctctc 17621926  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 12085457 - 12085559
Alignment:
Q  22 tttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaacttta 120  Q
    |||||||| | | ||||||||| ||||||||||||| |||| ||| |||| ||| || |||||  ||||||||||| |||| ||||||| ||||||||||    
T  12085457 tttctggtctacatgaccttactagttttggacaacatcttcagagtttaactaccacacaattaacctttataccttaaatatgattagtgaaacttta 12085556  T
Q  121 caa 123  Q
    |||    
T  12085557 caa 12085559  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 26330487 - 26330545
Alignment:
Q  34 ttgaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttt 92  Q
    |||| |||||||||||||||||||||||| |||||||| | | || |||||||||||||    
T  26330487 ttgatcttacaagttttggacaacctcttcagactttaacaaccacacaatccaccttt 26330545  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 26646066 - 26645949
Alignment:
Q  6 gcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacct-aaagat 104  Q
    |||||| || |||||||| ||||| | |||| || |||||||||| ||||  ||||| |||||||| ||| || |||||||||||||||| || |||||     
T  26646066 gcacacattatcttcatt-ctggtttacttggccatacaagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaagaa 26645968  T
Q  105 gattaatgaaactttacaa 123  Q
    ||||| |||| ||||||||    
T  26645967 gattagtgaagctttacaa 26645949  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 15984112 - 15984169
Alignment:
Q  36 gaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 93  Q
    |||||||||||||||| ||| |||||  ||||||| || |||||||||||||||||||    
T  15984112 gaccttacaagttttgcacatcctctccagacttttgcaatcatacaatccaccttta 15984169  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 20185952 - 20185911
Alignment:
Q  35 tgaccttacaagttttggacaacctctttagactttagctat 76  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  20185952 tgaccttacaagtttttgacagcctctttagactttggctat 20185911  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 15487674 - 15487624
Alignment:
Q  139 ttttgtgatcttagtcttatcaatgatcaatttgatctcacaatgacattt 189  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  15487674 ttttgtgatcttgatcttaacaatgatcaatttgatctcacaatgacattt 15487624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 21806720 - 21806638
Alignment:
Q  42 acaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaa 123  Q
    ||||||||||||||  ||||| | |||||||||| || || ||||||||||||| |||||||| ||||| | || ||||||||    
T  21806720 acaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaagaagattactaaagctttacaa 21806638  T

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Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 156605 - 156500
Alignment:
Q  11 ctttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagacttt-agctatcatacaatccacctttat-acctaaagatgatt 108  Q
    |||||||||| |||||||| | ||| ||| || |||||||||||| ||| || ||||||| ||||| ||||||||| |||||||| ||||||| | ||||    
T  156605 ctttctcttcttttctggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggatt 156506  T
Q  109 aatgaa 114  Q
    ||||||    
T  156505 aatgaa 156500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 33699841 - 33699928
Alignment:
Q  37 accttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaa 123  Q
    ||||||||| |||||| || |||||| |||||||||||   | |||||||||||||||| |||||||| ||||| |||| ||||||||    
T  33699841 accttacaaattttgggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaagctttacaa 33699928  T

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