View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_32 (Length: 236)
Name: NF3523_high_32
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39540847 - 39540624
Alignment:
| Q |
1 |
tcttgacattcttcaagatttgcatggagaagatatcagacaaactgtattttcttcaattcctttcttaattcttttcttatgcttatgaaannnnnnn |
100 |
Q |
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| T |
39540847 |
tcttgacattcttcaagatttgcatggagaagatatcagacaaactgtattttcttcaattcctttcttaattcttttcttatgcttatgaaaaaaatat |
39540748 |
T |
|
| Q |
101 |
nnnnnnnnnnnnn-aatattaacatatttttgaaaccccacttcaatttttggtcttgagtatgaaattagtttatattataattttcaaaattggactt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39540747 |
tagttttttagtttaatattaacatatttttgaaaccccacttcaatttttggtcttgagtatgaaattagtttatattataattttcaaaattggactt |
39540648 |
T |
|
| Q |
200 |
gagtatgtgttttaagtaaataat |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39540647 |
gagtatgtgttttaagtaaataat |
39540624 |
T |
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