View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_4 (Length: 594)
Name: NF3523_high_4
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 8407239 - 8406972
Alignment:
| Q |
12 |
atgaaatagagaaaaagtccatagcctttgttgcaggctaattaccaagctactacgtagtttcataattcttgcatgtaacgcagccttaattgtggtt |
111 |
Q |
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| T |
8407239 |
atgaaatagagaaaaagtccatagcctttgttgcatgctaattaccaagctactacttagtttcataattcttgcatgtaacgcagccttaattgtggtt |
8407140 |
T |
|
| Q |
112 |
ttatttgtacaacgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407139 |
ttatttgtacaacgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaat |
8407040 |
T |
|
| Q |
212 |
catagtttccttatttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8407039 |
catagtttccttatttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
8406972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 8432317 - 8432050
Alignment:
| Q |
12 |
atgaaatagagaaaaagtccatagcctttgttgcaggctaattaccaagctactacgtagtttcataattcttgcatgtaacgcagccttaattgtggtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8432317 |
atgaaatagagaaaaagtccatagcctttgttgcatgctaattaccaagctactacttagtttcataattcttgcatgtaacgcagccttaattgtggtt |
8432218 |
T |
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| Q |
112 |
ttatttgtacaacgttgcatgttgagaccacccaacatacacaaggcttggaattttgaatagagactatgtcaatttttaattaattcaattggtcaat |
211 |
Q |
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| T |
8432217 |
ttatttgtacaacgttgcatgttgagaccacccaacatacacaaggcttggaattttgaacagagactatgtcaatttttaattaattcaattggtcaat |
8432118 |
T |
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| Q |
212 |
catagtttccttatttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
279 |
Q |
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| T |
8432117 |
catagtttccttatttgattttgaccccttcccattctctttggcatataaatattgcataccacctt |
8432050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 323 - 594
Target Start/End: Complemental strand, 8432006 - 8431735
Alignment:
| Q |
323 |
ctttttatttccccaactatacactatcctaaattaacacaaagcaaacaccttcaaatattattaatttgtatatatcatggcttcaatattacaaact |
422 |
Q |
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| T |
8432006 |
ctttttatttccccaactatacactatcctaaattaacacaaagcaaacatcttcaaatattattaatttgtatatatcatggcttcaatattacaaact |
8431907 |
T |
|
| Q |
423 |
tcagttctaacttcttgttctttatcatctacaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaa |
522 |
Q |
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| T |
8431906 |
tcagttctaacttcttgttctttatcatcttcaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaa |
8431807 |
T |
|
| Q |
523 |
ccagaaaacaagttgttgatcaagaattaaaactacaaaacaatgaccacatcatcaaaacacaaatattac |
594 |
Q |
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| T |
8431806 |
ccagaaaacaagttgttgatcaagaattaaaactacaaaacaatgaacacatcaacaaaacagaaatattac |
8431735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 323 - 568
Target Start/End: Complemental strand, 8406925 - 8406680
Alignment:
| Q |
323 |
ctttttatttccccaactatacactatcctaaattaacacaaagcaaacaccttcaaatattattaatttgtatatatcatggcttcaatattacaaact |
422 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406925 |
ctttttatttccccaactatacactatcctaaattaacacaaagcaaacaccttcaaatattattaatttgtatatatcatggcttcaatattacaaact |
8406826 |
T |
|
| Q |
423 |
tcagttctaacttcttgttctttatcatctacaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaa |
522 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406825 |
tcagttctaacttcttgttctttatcatcttcaaagagagtaattaacgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaa |
8406726 |
T |
|
| Q |
523 |
ccagaaaacaagttgttgatcaagaattaaaactacaaaacaatga |
568 |
Q |
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| T |
8406725 |
ccagaaaacaagttgttgatcaagaattaaaactacaaaacaatga |
8406680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 373 - 554
Target Start/End: Complemental strand, 8412954 - 8412773
Alignment:
| Q |
373 |
ccttcaaatattattaatttgtatatatcatggcttcaatattacaaacttcagttctaacttcttgttctttatcatc---tacaaagagagtaattaa |
469 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||||| | |||||| ||||||||| |
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| T |
8412954 |
ccttcaaataatattaattcatatatatcatggctt---tattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaa |
8412858 |
T |
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| Q |
470 |
tgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
554 |
Q |
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|||| |||| |||| ||||||||| |||||||||||||| ||| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8412857 |
tgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
8412773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 373 - 554
Target Start/End: Complemental strand, 8435052 - 8434871
Alignment:
| Q |
373 |
ccttcaaatattattaatttgtatatatcatggcttcaatattacaaacttcagttctaacttcttgttctttatcatc---tacaaagagagtaattaa |
469 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||||| | |||||| ||||||||| |
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| T |
8435052 |
ccttcaaataatattaattcatatatatcatggctt---tattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaa |
8434956 |
T |
|
| Q |
470 |
tgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
554 |
Q |
| |
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|||| |||| |||| ||||||||| |||||||||||||| ||| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8434955 |
tgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
8434871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 554
Target Start/End: Original strand, 8394516 - 8394676
Alignment:
| Q |
394 |
tatatatcatggcttcaatattacaaacttcagttctaacttcttgttctttatcatc---tacaaagagagtaattaatgctgcaattaatcttccaaa |
490 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || | |||| |||||||| |||||| |||| |||| ||||| |
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| T |
8394516 |
tatatatcatgtcttcaata---caaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaa |
8394612 |
T |
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| Q |
491 |
actcccaaatatttcattgccaactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
554 |
Q |
| |
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|||| |||||||||||||| ||| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8394613 |
actcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
8394676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 8413236 - 8413187
Alignment:
| Q |
48 |
gctaattaccaagctactacgtagtttcataattcttgcatgtaacgcag |
97 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8413236 |
gctaattaccaagctactacgtagtttcgtttttcttgcatgtaacgcag |
8413187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 8435334 - 8435285
Alignment:
| Q |
48 |
gctaattaccaagctactacgtagtttcataattcttgcatgtaacgcag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8435334 |
gctaattaccaagctactacgtagtttcgtttttcttgcatgtaacgcag |
8435285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 8378199 - 8378235
Alignment:
| Q |
48 |
gctaattaccaagctactacgtagtttcataattctt |
84 |
Q |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
8378199 |
gctaattaccaagctactacgtagtttcgtatttctt |
8378235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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