View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3523_high_8 (Length: 441)

Name: NF3523_high_8
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3523_high_8
NF3523_high_8
[»] chr4 (1 HSPs)
chr4 (188-421)||(53099314-53099549)
[»] chr1 (2 HSPs)
chr1 (167-428)||(50816137-50816400)
chr1 (218-291)||(19043981-19044054)
[»] scaffold0203 (1 HSPs)
scaffold0203 (188-428)||(21337-21579)
[»] chr3 (5 HSPs)
chr3 (2-107)||(30825584-30825689)
chr3 (102-166)||(30827235-30827299)
chr3 (197-266)||(39049941-39050010)
chr3 (203-286)||(14082904-14082987)
chr3 (363-431)||(23820277-23820345)
[»] chr8 (3 HSPs)
chr8 (218-430)||(1011646-1011860)
chr8 (218-286)||(25107912-25107980)
chr8 (254-299)||(24428188-24428233)
[»] chr6 (2 HSPs)
chr6 (195-391)||(1691663-1691861)
chr6 (224-312)||(25352060-25352148)
[»] chr7 (3 HSPs)
chr7 (195-427)||(38429326-38429560)
chr7 (183-286)||(7289209-7289312)
chr7 (195-286)||(48779966-48780057)
[»] chr5 (1 HSPs)
chr5 (254-312)||(11977946-11978004)
[»] chr2 (2 HSPs)
chr2 (188-242)||(42050473-42050527)
chr2 (197-273)||(8091990-8092066)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 188 - 421
Target Start/End: Original strand, 53099314 - 53099549
Alignment:
Q  188 tttacggtggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggc 287  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||||||| ||| ||||||||||||| |  ||||||||||||     
T  53099314 tttacggtggaagaggtgaagcaagcgatatgggattgcgacagtttcaaaagtccaggtccagatggtgttagttttggtttcagtaagcaattttggt 53099413  T
Q  288 cggagttgaaggaagatttcatgcggtttgtgctagaatttcatcgtaacgaaaggttgataaagg--gtgaatgcaacttttatcgctctcattccaaa 385  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||  ||||||||||| ||||||||||||||||||||    
T  53099414 cggaattgaaggaagatttcatgcggtttgtgatagaatttcatcgtaatggaaggttgacaaagggagtgaatgcaacatttatcgctctcattccaaa 53099513  T
Q  386 ggtcgaaagcccacaaagattaaatgattttcgacc 421  Q
    |||||||||||| |||| ||| ||||| || |||||    
T  53099514 ggtcgaaagcccgcaaatattgaatgacttccgacc 53099549  T

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Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 167 - 428
Target Start/End: Original strand, 50816137 - 50816400
Alignment:
Q  167 tcgggtagtctcactcggccatttacggtggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttg 266  Q
    ||||||||||| | ||| || ||||| |||||||||||||||||||| ||||| || || |||||||||||||||||| ||||||| ||| |||||||||    
T  50816137 tcgggtagtcttattcgaccttttacagtggaagaggtgaagcaagcgatatgagattgcgacagtttcaaaagtccaggtccagatggtgttagttttg 50816236  T
Q  267 gttttatcaagcaattttggccggagttgaaggaagatttcatgcggtttgtgctagaatttcatcgtaacgaaaggttgataaagg--gtgaatgcaac 364  Q
    |||| || ||||||||||||||||| | ||||||||| |||||| ||||| || |||||||||||||||| | |||||||| |||||  |||||||||||    
T  50816237 gtttcattaagcaattttggccggaatagaaggaagacttcatgtggtttatgatagaatttcatcgtaatggaaggttgacaaagggagtgaatgcaac 50816336  T
Q  365 ttttatcgctctcattccaaaggtcgaaagcccacaaagattaaatgattttcgacctatatct 428  Q
     |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||    
T  50816337 atttatcgctctcattccaaaggtcgatagcccgcaaagattgaatgacttccgacctatatct 50816400  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 19044054 - 19043981
Alignment:
Q  218 tgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggccgga 291  Q
    ||||| ||||||||||||||||||||| |||| || ||||||  |||||| ||||| ||| | |||||| ||||    
T  19044054 tgggattgtgacagtttcaaaagtccaggtcctgacggtattcattttggctttattaaggacttttggtcgga 19043981  T

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Target: scaffold0203 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 188 - 428
Target Start/End: Original strand, 21337 - 21579
Alignment:
Q  188 tttacggtggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggc 287  Q
    |||||||||||||||||||||||||| |||||||| || || ||||||||||||||| ||||| | ||| ||||||||||||| || ||||||||||||     
T  21337 tttacggtggaagaggtgaagcaagcgatatgggattgcgatagtttcaaaagtccaggtccaaatggtgttagttttggtttcattaagcaattttggt 21436  T
Q  288 cggagttgaaggaagatttcatgcggtttgtgctagaatttcatcgtaacgaaaggttgataaagg--gtgaatgcaacttttatcgctctcattccaaa 385  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||| | |||  ||||||||||| ||||||||||||||||||||    
T  21437 cggaattgaaggaagatttcatgcggtttgtgatagaatttcatcgtaatggaaggttgacagagggagtgaatgcaacatttatcgctctcattccaaa 21536  T
Q  386 ggtcgaaagcccacaaagattaaatgattttcgacctatatct 428  Q
    |||||||||||| ||||| || ||||| || ||||| ||||||    
T  21537 ggtcgaaagcccgcaaagtttgaatgacttccgaccgatatct 21579  T

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Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 30825584 - 30825689
Alignment:
Q  2 acacacatcccttccttaactgaataaatattttcaagggattgcgttaagaaatcgtggattttgaaagaattaaaaatatattcaaccataaataaga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30825584 acacacatcccttccttaactgaataaatattttcaagggattgcgttaagaaatcgtggattttgaaagaattaaaaatatattcaaccataaataaga 30825683  T
Q  102 aaagca 107  Q
    ||||||    
T  30825684 aaagca 30825689  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 30827235 - 30827299
Alignment:
Q  102 aaagcatcaaatcttgaacggacagaggtggagagtctatgattctgtaggctgactgtgtcaga 166  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||    
T  30827235 aaagcatcaaatcttgaacggccaggggtggagagtctacgattccgtaggctgactgtgtcaga 30827299  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 39049941 - 39050010
Alignment:
Q  197 gaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttg 266  Q
    ||||| |||||||||||| | ||||||||||||||||| ||||||| | | || || |||||||||||||    
T  39049941 gaagaagtgaagcaagcagtgtgggactgtgacagttttaaaagtctaggacctgatggtattagttttg 39050010  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 14082904 - 14082987
Alignment:
Q  203 gtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttgg 286  Q
    ||||| |||||||||||||| |||||||||||||| |||||  | || || |  |||||||| |||||||| || |||||||||    
T  14082904 gtgaaacaagcaatatgggattgtgacagtttcaagagtccggggccggacgacattagtttcggttttataaaacaattttgg 14082987  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 23820345 - 23820277
Alignment:
Q  363 acttttatcgctctcattccaaaggtcgaaagcccacaaagattaaatgattttcgacctatatctctg 431  Q
    |||||||| |||||||||||||| || || ||||||||| |  | |||||||||||||| || ||||||    
T  23820345 acttttattgctctcattccaaaagttgatagcccacaacgccttaatgattttcgaccaatctctctg 23820277  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 430
Target Start/End: Complemental strand, 1011860 - 1011646
Alignment:
Q  218 tgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggccggagttgaaggaagatttcatgcggtttg 317  Q
    ||||||||||| || ||||| |||||| | || || | ||| | |||||||||||| || ||||| |||  |||||||||||| ||||| ||||| ||||    
T  1011860 tgggactgtgatagcttcaagagtccaggaccggatgatatcaattttggttttattaaacaattctggttggagttgaaggatgattttatgcgttttg 1011761  T
Q  318 tgctagaatttcatcgtaacgaaaggttgataaaggg--tgaatgcaacttttatcgctctcattccaaaggtcgaaagcccacaaagattaaatgattt 415  Q
    || | ||||| ||||| |||| ||  ||||  |||||  ||||||||||||||||| ||||||||||||||||||| || || ||||| |||||||| ||    
T  1011760 tggttgaattccatcggaacggaaaattgactaagggagtgaatgcaacttttatctctctcattccaaaggtcgatagtcctcaaaggttaaatgactt 1011661  T
Q  416 tcgacctatatctct 430  Q
    ||| |||||||||||    
T  1011660 tcgtcctatatctct 1011646  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 25107912 - 25107980
Alignment:
Q  218 tgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttgg 286  Q
    ||||| |||||||||| ||| |||||| |||| || ||| |||||||||||||||| ||| ||||||||    
T  25107912 tgggattgtgacagttacaagagtccaggtcctgatggtgttagttttggttttattaaggaattttgg 25107980  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 24428233 - 24428188
Alignment:
Q  254 ggtattagttttggttttatcaagcaattttggccggagttgaagg 299  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||    
T  24428233 ggtattagtattggttttatcaagcagttttggacggaattgaagg 24428188  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 391
Target Start/End: Complemental strand, 1691861 - 1691663
Alignment:
Q  195 tggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggccggagtt 294  Q
    |||||||||| |||||||| |||||||| || || |||||||| ||  || |  | || |||||||  ||||| ||||| |||||||||||||| || ||    
T  1691861 tggaagaggttaagcaagcgatatgggattgcgatagtttcaagagctcaggatcggatggtattacctttggctttattaagcaattttggccagaatt 1691762  T
Q  295 gaaggaagatttcatgcggtttgtgctagaatttcatcgtaacgaaaggttgataaagg--gtgaatgcaacttttatcgctctcattccaaaggtcga 391  Q
     ||||| || |||||||| ||| || | ||||||||||||||||  ||||||| |||||  ||||||||||| |||||| | |||||||||||||||||    
T  1691761 taaggatgacttcatgcgttttttgttggaatttcatcgtaacggcaggttgacaaagggagtgaatgcaacgtttatcacactcattccaaaggtcga 1691663  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 25352148 - 25352060
Alignment:
Q  224 tgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggccggagttgaaggaagatttcatgcg 312  Q
    ||||| ||||||||||| ||| | || || ||  ||| |||||||||||| ||||||||||||   ||||||||||| ||| |||||||    
T  25352148 tgtgatagtttcaaaagcccaggacctgatggggttaattttggttttattaagcaattttgggatgagttgaaggaggatgtcatgcg 25352060  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 427
Target Start/End: Original strand, 38429326 - 38429560
Alignment:
Q  195 tggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttggccggagtt 294  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||| ||  | ||  | ||| | ||||| || ||| ||||||||||||||   | | |    
T  38429326 tggaagaggtgaaacaagcaatatgggactgtgatagttacaaaagcccggggccgaatggtgtcagtttcgggtttctcaagcaattttggaatgtggt 38429425  T
Q  295 gaaggaagatttcatgcggtttgtgctagaatttcatcgtaacgaaaggttgataaaggg--tgaatgcaacttttatcgctctcattccaaaggtcgaa 392  Q
    |||||| |||||| |||| ||||   | ||| ||||||| |||| |||| |   ||||||  | || || |||||||| ||| | ||||| ||||| ||     
T  38429426 gaaggatgatttcttgcgctttgaaatggaacttcatcgcaacggaaggcttccaaagggaattaacgcgacttttattgctttaattcctaaggtggat 38429525  T
Q  393 agcccacaaagattaaatgattttcgacctatatc 427  Q
    ||||||||| | ||| |||||||||||||||||||    
T  38429526 agcccacaacggttacatgattttcgacctatatc 38429560  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 7289312 - 7289209
Alignment:
Q  183 ggccatttacggtggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaatt 282  Q
    |||||||||||||||| ||||| || ||||| ||||||||||| || |  | |||||||||  | || || ||| | |||||||||||||| || |||||    
T  7289312 ggccatttacggtggaggaggtaaaacaagcgatatgggactgcgataactacaaaagtccgggacctgatggtgtcagttttggttttattaaacaatt 7289213  T
Q  283 ttgg 286  Q
    ||||    
T  7289212 ttgg 7289209  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 48780057 - 48779966
Alignment:
Q  195 tggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttatcaagcaattttgg 286  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||| ||  | ||||| ||| | || ||||| ||| | ||||||||||||    
T  48780057 tggaagaggttaagcaagcagtttgggactgtgacagttttaaaagcccgggaccagatggtgtcagctttggatttcttaagcaattttgg 48779966  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 11977946 - 11978004
Alignment:
Q  254 ggtattagttttggttttatcaagcaattttggccggagttgaaggaagatttcatgcg 312  Q
    ||||||||||||||||| |||| | |||||||||||||  ||||||| ||||| |||||    
T  11977946 ggtattagttttggtttcatcatgaaattttggccggaagtgaaggatgattttatgcg 11978004  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 42050473 - 42050527
Alignment:
Q  188 tttacggtggaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtc 242  Q
    |||||||| |||||||| || |||||||||||||| ||||| |||| ||||||||    
T  42050473 tttacggtagaagaggtaaaacaagcaatatgggattgtgatagttacaaaagtc 42050527  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 8092066 - 8091990
Alignment:
Q  197 gaagaggtgaagcaagcaatatgggactgtgacagtttcaaaagtccatgtccagaaggtattagttttggttttat 273  Q
    ||||| ||||| |||||  |||||||||| |||||||||||||||||| || |  | ||||||| |||| |||||||    
T  8092066 gaagaagtgaaacaagctctatgggactgcgacagtttcaaaagtccaggttctaatggtattaattttagttttat 8091990  T

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