View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3523_low_10 (Length: 421)

Name: NF3523_low_10
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3523_low_10
NF3523_low_10
[»] chr4 (6 HSPs)
chr4 (17-411)||(41075630-41076028)
chr4 (159-222)||(42694703-42694766)
chr4 (161-228)||(41073182-41073249)
chr4 (318-397)||(42693854-42693932)
chr4 (111-152)||(41073303-41073344)
chr4 (273-310)||(42694492-42694529)
[»] scaffold0384 (1 HSPs)
scaffold0384 (17-79)||(3404-3465)
[»] scaffold0079 (1 HSPs)
scaffold0079 (17-79)||(5963-6024)
[»] chr7 (5 HSPs)
chr7 (275-337)||(45557435-45557497)
chr7 (277-337)||(40491650-40491710)
chr7 (275-337)||(25156270-25156332)
chr7 (273-337)||(17111913-17111977)
chr7 (274-334)||(40561714-40561774)
[»] chr8 (5 HSPs)
chr8 (274-337)||(32927961-32928024)
chr8 (273-318)||(9461510-9461555)
chr8 (274-337)||(26100099-26100162)
chr8 (285-318)||(5219199-5219232)
chr8 (277-325)||(7533869-7533917)
[»] chr3 (3 HSPs)
chr3 (273-337)||(31013086-31013150)
chr3 (160-206)||(39054247-39054293)
chr3 (273-337)||(31708192-31708256)
[»] chr5 (1 HSPs)
chr5 (111-149)||(29821955-29821993)
[»] chr2 (3 HSPs)
chr2 (274-336)||(16518847-16518909)
chr2 (273-329)||(680251-680307)
chr2 (277-329)||(1976825-1976877)
[»] chr1 (2 HSPs)
chr1 (274-312)||(30557571-30557609)
chr1 (273-337)||(34915134-34915198)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 41075630 - 41076028
Alignment:
Q  17 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttggagatcaat 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |    
T  41075630 agttttgaatcatgtgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttgaattttt-t 41075728  T
Q  117 tttggggattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41075729 tttggagattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc 41075828  T
Q  217 tatgtatggtttcgg------gttcgtaaacaacaaacacacgttcatggccatcaaccgtgattcaactcacttttatatgaatgtatcaaaaaacaaa 310  Q
    ||||||||||||| |      |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  41075829 tatgtatggtttcagtttcaggttcgtaaacaacaaacacacgttcatggccatcaatcgtgatttagctcacttttatatgaatgtatcaaaaaacaaa 41075928  T
Q  311 tcgctttacctacaactcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaaacatacacaggtt 410  Q
     | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41075929 ccactttacctacaactcatttttag-ttagattaaattctacagaaccaatttacttcgaatcggtttttgtcaaatctcaaccaaacatacacaggtt 41076027  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 42694703 - 42694766
Alignment:
Q  159 cacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgta 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  42694703 cacttgaaaaacacttctaatgtatctaaacttaaaaccaaacaccctatacttagtcaatgta 42694766  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 41073249 - 41073182
Alignment:
Q  161 cttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggttt 228  Q
    ||||||||||||||||||||||||  |||||||||||||||||  || || ||| |||||| ||||||    
T  41073249 cttgaaaaacacttctaatgcatcctaacttaaaaccaaacacaataaacatagcctatgtttggttt 41073182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 42693932 - 42693854
Alignment:
Q  318 acctacaactcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaa 397  Q
    |||||||||||| |||||||| ||| |||||| |||| |  ||||||||| | |||||||| ||||| ||||||||||||    
T  42693932 acctacaactcaattttagtt-agaataaattttacagagtcaatttactccaaatcaattcttgtctaatctcaaccaa 42693854  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 41073303 - 41073344
Alignment:
Q  111 atcaattttggggattaaaatcaattctatttgaagctaata 152  Q
    ||||||||||| || ||||| |||||||||||||||||||||    
T  41073303 atcaattttggtgagtaaaaacaattctatttgaagctaata 41073344  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 42694529 - 42694492
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaa 310  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  42694529 attcaactcacttttacatgaatatatcaaaaaacaaa 42694492  T

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Target: scaffold0384 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3465 - 3404
Alignment:
Q  17 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 79  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3465 agttttgaatcatgtgtgttggtgggttat-gttatgtgtaacttatgttgcctgaaaactgt 3404  T

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Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 6024 - 5963
Alignment:
Q  17 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 79  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||    
T  6024 agttttgaatcatgtgtgttggtgggttat-gttatgcgtaacttatgttgcctgaaaactgt 5963  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 45557435 - 45557497
Alignment:
Q  275 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||| |||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagt 45557497  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 40491650 - 40491710
Alignment:
Q  277 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||| |||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagt 40491710  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 25156270 - 25156332
Alignment:
Q  275 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||||||||||||||||||||||||  ||| |||||||  |||| || |||||||||||||||    
T  25156270 tcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagt 25156332  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 17111913 - 17111977
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||| ||||| ||||| ||||||| ||| ||| ||||||| |||||||||||| ||| |||||||    
T  17111913 attctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagt 17111977  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 40561774 - 40561714
Alignment:
Q  274 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcattttt 334  Q
    ||||||||||||||| ||||||||||| ||| | ||||| |||||| | ||||||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 32927961 - 32928024
Alignment:
Q  274 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    ||||||||||||||| ||||||||||| ||| ||||||| |||| ||| ||||||| |||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagt 32928024  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 9461555 - 9461510
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgcttta 318  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  9461555 attcaactcacttttatatgaatgtatccaaacacaaatcacttta 9461510  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 26100162 - 26100099
Alignment:
Q  274 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    ||||||||||||||| || |||| ||| ||| |||||| ||||||||| |||||| ||||||||    
T  26100162 ttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagt 26100099  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 5219199 - 5219232
Alignment:
Q  285 tttatatgaatgtatcaaaaaacaaatcgcttta 318  Q
    |||||||||||||||||||||||||||| |||||    
T  5219199 tttatatgaatgtatcaaaaaacaaatcacttta 5219232  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 7533869 - 7533917
Alignment:
Q  277 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaa 325  Q
    |||||||||||||||||||||| | ||| ||| ||| ||||||||||||    
T  7533869 aactcacttttatatgaatgtacccaaacacagatcactttacctacaa 7533917  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 31013086 - 31013150
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    ||||||||||||| || ||||||| ||| ||| ||||||| ||||| |||||||||| |||||||    
T  31013086 attcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagt 31013150  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 39054247 - 39054293
Alignment:
Q  160 acttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccct 206  Q
    |||||||||||||||||||  ||||||||| |||||||||| |||||    
T  39054247 acttgaaaaacacttctaagacatctaaacataaaaccaaaaaccct 39054293  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 31708256 - 31708192
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||| |  ||||||| |||||||    
T  31708256 attcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagt 31708192  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 29821955 - 29821993
Alignment:
Q  111 atcaattttggggattaaaatcaattctatttgaagcta 149  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  29821955 atcaattttggagattaaaaacaattctatttgaagcta 29821993  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 16518847 - 16518909
Alignment:
Q  274 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttag 336  Q
    ||||||||||||||| ||||||||||| ||| |||||||  ||||||  ||||||| ||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 680307 - 680251
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 329  Q
    |||||||||||||||| ||||||||||  ||| ||||| | |||||||| |||||||    
T  680307 attcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactca 680251  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 1976877 - 1976825
Alignment:
Q  277 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 329  Q
    |||||||||||| ||||||||||| ||| | || ||||||||||| |||||||    
T  1976877 aactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactca 1976825  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 30557571 - 30557609
Alignment:
Q  274 ttcaactcacttttatatgaatgtatcaaaaaacaaatc 312  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30557571 ttcaactcacttttatatgaatgtatccaaacacaaatc 30557609  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 34915134 - 34915198
Alignment:
Q  273 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 337  Q
    |||||||||||||||| ||||||||||  ||| | |||||  ||||||| ||||||| |||||||    
T  34915134 attcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagt 34915198  T

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