View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_11 (Length: 417)
Name: NF3523_low_11
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 212 - 403
Target Start/End: Original strand, 37316775 - 37316966
Alignment:
| Q |
212 |
taaactctagtttagtagtaatacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaat |
311 |
Q |
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| T |
37316775 |
taaactctagtttagtagtaatacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaat |
37316874 |
T |
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| Q |
312 |
ttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttct |
403 |
Q |
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| T |
37316875 |
ttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttct |
37316966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 127 - 403
Target Start/End: Original strand, 37320258 - 37320545
Alignment:
| Q |
127 |
tttatttcacctatttgactttcactttaggtgagagtgtctaacaggagcataataacaatttaccgaataacaaatnnnnnnntaaactctagtttag |
226 |
Q |
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| T |
37320258 |
tttatttcacctatttgactttcactttaggcgagagtgtgtaacagaagcataataacaatttactgaataacaaatcaaaatataaactctactttta |
37320357 |
T |
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| Q |
227 |
t--ag------taa---tacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttag |
315 |
Q |
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| T |
37320358 |
tgaagcacctataaggctagacctaactaataatggaacataaatatgtcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttag |
37320457 |
T |
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| Q |
316 |
cttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttct |
403 |
Q |
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| T |
37320458 |
cttgagcataaccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttct |
37320545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 237 - 403
Target Start/End: Original strand, 37324360 - 37324526
Alignment:
| Q |
237 |
cctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcatacccacgtacaa |
336 |
Q |
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|||| |||||||||||| || |||| ||||| || |||| |||||||||||| || |||||||| |||||||| ||||| |||||||| |||||||| | |
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| T |
37324360 |
cctaactaataatggaacacaaatatgtcatattctacaacggcatctccttttgtataatcaaccgaataaaacttagcctgagcatatccacgtacga |
37324459 |
T |
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| Q |
337 |
aacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttct |
403 |
Q |
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| T |
37324460 |
aacgaaatgccccggttccaccaactatggccatttctctaacaggttcactcatgatcatgtttct |
37324526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 37306524 - 37306615
Alignment:
| Q |
306 |
taaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcat |
397 |
Q |
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| T |
37306524 |
taaaacttggcttgagcataaccacgaacaaatctgaaagccccagttccaccaacaataggcatttctctaataggttcactcacgatcat |
37306615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37316571 - 37316617
Alignment:
| Q |
1 |
attacacaattgttgtctgtttatctgtcttaacatgcttgtcttac |
47 |
Q |
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| T |
37316571 |
attacacacttgttgtctgtttatctgtcttaacatgcttgtcttac |
37316617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 37316682 - 37316711
Alignment:
| Q |
112 |
gtggtatacatttgttttatttcacctatt |
141 |
Q |
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| T |
37316682 |
gtggtatacatttgttttatttcacctatt |
37316711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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