View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3523_low_12 (Length: 409)
Name: NF3523_low_12
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 3534404 - 3534031
Alignment:
| Q |
13 |
tgagataaacatatgttctttagtggattttggagatattatcacaacttactcctgtatatatctccattttgtcgtggttgcttcaatcttcaactaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534404 |
tgagataaacatatgttctttagtggattttgaagatattatcacaacttactcctgtatatatctccattttgtcgtggttgcttcaatcttcaactaa |
3534305 |
T |
|
| Q |
113 |
ttaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccccaccctacttaagaggcacggtgaaacctgaaattgggga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534304 |
ttaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccccaccctacttaagaggcacggtgaaacctgaaattgggga |
3534205 |
T |
|
| Q |
213 |
ccaaatacaaaagcatctacaccttctagtaggatggtccaagtatgggacactcacatgtacac--tagtttgggagacaaattagttgttaatcatca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
3534204 |
ccaaatacaaaagcatctacaccttctagtaggatggtccaagtatgggacactcacatgtacactatagtttgggagacaaattaattgttaatcatca |
3534105 |
T |
|
| Q |
311 |
aagcatgtcgcacacctgcttgatttccattaactccatca----tatttacttgttaggtctttgttaacaaaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
3534104 |
aagcatgtcgcacacctgcttgatttccattaacttcatcatatttatttacttgtta-gtctttgttaacaaaa |
3534031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 3527049 - 3526970
Alignment:
| Q |
97 |
ttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccccacc |
176 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
3527049 |
ttcaatcttcaactaattaccaagcacaatcgtgggattcatcaacaaaacctcatgcatgaggcttggttttccccacc |
3526970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 3526934 - 3526892
Alignment:
| Q |
210 |
ggaccaaatacaaaagcatctacaccttctagtaggatggtcc |
252 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
3526934 |
ggaccaaaaacaaaagcatctaccacttctagtaggatggtcc |
3526892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University