View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_15 (Length: 359)
Name: NF3523_low_15
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 36833414 - 36833074
Alignment:
| Q |
12 |
atttgaatatcatcttttctgtaattttttcttgtaaaattattgataatgagttcataattatgttttaaatcgttggaagagtgtcccaccaagtaaa |
111 |
Q |
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| T |
36833414 |
atttgaatatcatattttctgtaattttttcttgtaaaattattgataatgagttcataattatgttttaaatcgttggaagagtgtcccaccaagtaaa |
36833315 |
T |
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| Q |
112 |
gtcatgacagtcgtgtctcaggatagtaagtttgtcataacaaatgttaccttctctgaagacatgggagaagaggaggcgtaaaggagaggcaaagcaa |
211 |
Q |
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| T |
36833314 |
gtcatgacagtcgtgtcccaggatagtaagtttgtcggaataagtgttaccttctctgaagacatgggagaagaggagacgtaaaggagaggcaaagcaa |
36833215 |
T |
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| Q |
212 |
ttgttccaacgattgggaaggtcccaaggaaccaaatcatgagatttcgaaatagctatctacgaatcactctcgatccaaaggtgactccaacctttga |
311 |
Q |
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| T |
36833214 |
ttgttccaacaattgggaaggtcccaaggaaccaaatcatgagattttgaaatagttatctacgaatcactttcaattcaaaggtgactccaacctttga |
36833115 |
T |
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| Q |
312 |
tatgctcctattcaatatcaataattattttgcaccctttg |
352 |
Q |
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| T |
36833114 |
tatgcgcaaattcaatatcaataattattttgcaccctttg |
36833074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 310
Target Start/End: Complemental strand, 42068840 - 42068679
Alignment:
| Q |
151 |
acaaatgttaccttctctgaagacatgggagaagaggaggcgtaaaggagaggcaaagcaattgttccaacgattgggaaggtcccaaggaaccaaatca |
250 |
Q |
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| T |
42068840 |
acaagtgttaccttctctgaagacatgggagaataggaggcgtaaaggagaggcaaaacaattgctctaatgattgcgaaggtcccaagagaccaaatca |
42068741 |
T |
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| Q |
251 |
tgagatttcga--aatagctatctacgaatcactctcgatccaaaggtgactccaacctttg |
310 |
Q |
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| T |
42068740 |
tgaaatttgaatgaatagctatcggtgaatcactctcaatccaaagacgactccaacctttg |
42068679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 258
Target Start/End: Original strand, 9981940 - 9982108
Alignment:
| Q |
90 |
gaagagtgtcccaccaagtaaagtcatgacagtcgtgtctcaggatagtaagtttgtcataacaaatgttaccttctctgaagacatgggagaagaggag |
189 |
Q |
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| T |
9981940 |
gaagtgtgtcctaccaagtaaagtccagacaaccatgactcagggcagtaagtttgtcggcacaagtgttaccttctctaaaaacatgggagaagaggag |
9982039 |
T |
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| Q |
190 |
gcgtaaaggagaggcaaagcaattgttccaacgattgggaaggtcccaaggaaccaaatcatgagattt |
258 |
Q |
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| T |
9982040 |
gcacataagagaagcaaagcaattgctccaatgattgcgaaggtcccaaggaaccatatcatgatattt |
9982108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 49329991 - 49330068
Alignment:
| Q |
156 |
tgttaccttctctgaagacatgggagaagaggaggcgtaaaggagaggcaaagcaattgttccaacgattgggaaggt |
233 |
Q |
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| T |
49329991 |
tgttaccttcgctaaagacataggagaagaggatgcgtaaaggagaggcaaagtaattgatccaacgattgtgaaggt |
49330068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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