View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_16 (Length: 356)
Name: NF3523_low_16
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 38442780 - 38443082
Alignment:
| Q |
12 |
agtagcaaagggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatggcatgggataagttacatgg |
111 |
Q |
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| T |
38442780 |
agtatcaaagggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatgggatgggataagttaaatgg |
38442879 |
T |
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| Q |
112 |
cttatcnnnnnnnnttcacgtgaaaagttaacaaacaacatggataagaattttcacattcccatagtatttggaaaattcggttagtcaaactatattt |
211 |
Q |
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| T |
38442880 |
cttatcaaaaaaaattcacgtgaaaagttaacaaacaacatg-ataagaattttcacattcccatagtatttggaaaattcggtaagtccaactatatt- |
38442977 |
T |
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| Q |
212 |
gccatagtttatttatttaaaactctctttcattcccccctaatattttggaaattcagttaatgaaaatacatataaatttgaatatctcacaattcac |
311 |
Q |
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| T |
38442978 |
gccatagtttatttatttaaaactctctttcattcccccctaatattttggaaattcagttaatg-aaatacatataaatttgaatatctcacaattcac |
38443076 |
T |
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| Q |
312 |
atagtt |
317 |
Q |
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|||||| |
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| T |
38443077 |
atagtt |
38443082 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 53352723 - 53352659
Alignment:
| Q |
22 |
ggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatat |
86 |
Q |
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|||||| |||||||||||||| |||||| || |||||||||| ||||||||||||||||||||| |
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| T |
53352723 |
ggtttgaaggtaggtttgtgcgatatacatggtaatataattgggataagttatatgccttatat |
53352659 |
T |
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