View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_19 (Length: 310)
Name: NF3523_low_19
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 20828529 - 20828251
Alignment:
| Q |
19 |
gtttagtggggtggtgtctaatttgttggagacacagtaaaatctaaaaggtactattagcattaannnnnnnnnnnnnnnnctaaacacaattataaaa |
118 |
Q |
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| T |
20828529 |
gtttagtggggtggtgtctaatttgttggagacacagtaaaatctaaaaggtactattagcattaatttttttttttt----ctaaacacaattataaaa |
20828434 |
T |
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| Q |
119 |
acttnnnnnnnnnnnn--tgttctctaacacatttattttaatgttattattggtgcaaagtattcacaannnnnnn-atcattaatcatctaccttatg |
215 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20828433 |
acttaaaaaaaaaaaaaatgttctctaacacatttattttaatcttattattggtgcaaagtattcacaattattttgatcattaatcatctaccttatg |
20828334 |
T |
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| Q |
216 |
gcgggtttccccacccatccacatattttccatctacatgagtttaaacgcgagatcttgcttaattaaggaatttgagttca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20828333 |
gcgggtttccccacccatccacatattttccatctacatgagtttaaacacgagatcttgcttaattaaggaatttgagttca |
20828251 |
T |
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