View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_20 (Length: 306)
Name: NF3523_low_20
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 43560761 - 43561048
Alignment:
| Q |
1 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
100 |
Q |
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| T |
43560761 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
43560860 |
T |
|
| Q |
101 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
200 |
Q |
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| T |
43560861 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
43560960 |
T |
|
| Q |
201 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttc |
288 |
Q |
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| T |
43560961 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttc |
43561048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 17730399 - 17730112
Alignment:
| Q |
1 |
tctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
17730399 |
tctaccctatattgtatctttttcgcgaataatggtaggagacaaaatattgaactctaaagaagccagtttggctctggcctttagagcttccttcaag |
17730300 |
T |
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| Q |
101 |
ttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaaggctctctctaaagactt |
200 |
Q |
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| T |
17730299 |
tttgagcgaacctccataagctcgtcatcgatatttgtaagctcgtttttcaattcttgtttatgcatggccatgtgatcaaggtgctctctaaagactt |
17730200 |
T |
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| Q |
201 |
gttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatcttc |
288 |
Q |
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| T |
17730199 |
gttcagatccctccacagaaccattccattgagccagtattcctctttgctccgcaagaacctgttgttctttaaatcgaatatcttc |
17730112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 43570053 - 43570167
Alignment:
| Q |
10 |
tattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcctttagagcttctttcaagttcgagcga |
109 |
Q |
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| T |
43570053 |
tattgtatctttttcacgaataatgctaggagaaaaaatattgaactctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcga |
43570152 |
T |
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| Q |
110 |
acctccataagctcg |
124 |
Q |
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| T |
43570153 |
acctccataagctcg |
43570167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 1622103 - 1622194
Alignment:
| Q |
194 |
aagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatc |
285 |
Q |
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| T |
1622103 |
aagacttgttcagatccttccgcagaaccattccattgagccagtattcctctttgctccgcaagaacttgttgttctctagtttgaatatc |
1622194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 1601625 - 1601716
Alignment:
| Q |
194 |
aagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgcaagaacttgttgtactctaattcgaatatc |
285 |
Q |
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| T |
1601625 |
aagacttgttcagatctttccgcagaaccattccattgagccaatattcctctttgctccgcaagaacttgttgttctctagtttgaatatc |
1601716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 1601591 - 1601474
Alignment:
| Q |
157 |
ttgtttatgcatggccaagtgctcaaggctctctctaaagacttgttcagatccctccacagaactgttccattcaaccagtattcctctttcctgtgca |
256 |
Q |
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| T |
1601591 |
ttgtttctacatggccaagtattcaaggtgctatctcaagacttgttcagatccctccgtagaaccatttcatcgagcccgtattcctctatgctccgca |
1601492 |
T |
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| Q |
257 |
agaacttgttgtactcta |
274 |
Q |
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|||||||||||| ||||| |
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| T |
1601491 |
agaacttgttgttctcta |
1601474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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