View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_21 (Length: 304)
Name: NF3523_low_21
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3430174 - 3430463
Alignment:
| Q |
1 |
aaatgtttgaggtcggaaaagtgttcctcctcttccacttctgaaagaatattgagcaaagagaccaacaccatc---------atcatcatcttcatga |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3430174 |
aaatgtttgaggtcggaaaagtgttcctcctcttccacttctgaaagaatattgagcaaagagaccaacaccatcatcatcatcatcatcatcttcatga |
3430273 |
T |
|
| Q |
92 |
ataagatttcctcgtgaaattagcagtggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctttgtcctacaacgcggcgacggtg |
191 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430274 |
ataagatttcctcgtgaaatcagcagtggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctttgtcctacaacgcggcgacggtg |
3430373 |
T |
|
| Q |
192 |
atggatgcggtggnnnnnnnctccgggatgtaatcgccggcgatcttaaggtttgcgacatgcaatataggaataggaattaggaaaggt |
281 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430374 |
atggatgcggtggtttttttctccgggatgtaatcgccggcgatcttaaggtttgcgacatgcaatataggaataggaattaggaaaggt |
3430463 |
T |
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