View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_22 (Length: 300)
Name: NF3523_low_22
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_22 |
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| [»] scaffold0384 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 41075630 - 41075893
Alignment:
| Q |
17 |
agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttggagatcaat |
116 |
Q |
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| T |
41075630 |
agttttgaatcatgtgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttgaattttt-t |
41075728 |
T |
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| Q |
117 |
tttggggattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc |
216 |
Q |
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| T |
41075729 |
tttggagattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc |
41075828 |
T |
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| Q |
217 |
tatgtatg------gtttcgggttcgtaaacaacaaacacacgttcatggccatcaaccgtgatt |
275 |
Q |
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| T |
41075829 |
tatgtatggtttcagtttcaggttcgtaaacaacaaacacacgttcatggccatcaatcgtgatt |
41075893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 42694703 - 42694766
Alignment:
| Q |
159 |
cacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgta |
222 |
Q |
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| T |
42694703 |
cacttgaaaaacacttctaatgtatctaaacttaaaaccaaacaccctatacttagtcaatgta |
42694766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 41073249 - 41073182
Alignment:
| Q |
161 |
cttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggttt |
228 |
Q |
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| T |
41073249 |
cttgaaaaacacttctaatgcatcctaacttaaaaccaaacacaataaacatagcctatgtttggttt |
41073182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 41073303 - 41073344
Alignment:
| Q |
111 |
atcaattttggggattaaaatcaattctatttgaagctaata |
152 |
Q |
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| T |
41073303 |
atcaattttggtgagtaaaaacaattctatttgaagctaata |
41073344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3465 - 3404
Alignment:
| Q |
17 |
agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt |
79 |
Q |
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| T |
3465 |
agttttgaatcatgtgtgttggtgggttat-gttatgtgtaacttatgttgcctgaaaactgt |
3404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 6024 - 5963
Alignment:
| Q |
17 |
agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt |
79 |
Q |
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||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
6024 |
agttttgaatcatgtgtgttggtgggttat-gttatgcgtaacttatgttgcctgaaaactgt |
5963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 29821955 - 29821993
Alignment:
| Q |
111 |
atcaattttggggattaaaatcaattctatttgaagcta |
149 |
Q |
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| T |
29821955 |
atcaattttggagattaaaaacaattctatttgaagcta |
29821993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 39054247 - 39054293
Alignment:
| Q |
160 |
acttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccct |
206 |
Q |
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| T |
39054247 |
acttgaaaaacacttctaagacatctaaacataaaaccaaaaaccct |
39054293 |
T |
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