View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_26 (Length: 255)
Name: NF3523_low_26
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 37312855 - 37313028
Alignment:
| Q |
6 |
agagagaagaataatgtagttcaaacatctttcaagagaggagattataatttacactaataaatattatattagattttgaaaattctcgccataaagt |
105 |
Q |
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| T |
37312855 |
agagagaagaataatgtagttcaaacaactttcaagagaggagattataatttacactaataaatattatattagattttgaaaattctcgccataaagt |
37312954 |
T |
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| Q |
106 |
tttgacgaaaaatccttgtatccataggcaaactaagaaagtaaccaaaattatatacttatgttttgttttgta |
180 |
Q |
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| T |
37312955 |
tttgacgaaaaatccttgtatccttaggcaaactaagaaagtaaccaaaattatat-cttatgttttgttttgta |
37313028 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 37316241 - 37316316
Alignment:
| Q |
180 |
atgttcttttaggggttatgttatgttattgacacgtatgcatgtggaagttattgtcaacctagaccctacatgt |
255 |
Q |
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| T |
37316241 |
atgttcttttaggggttatgttatgttattgacacgtatgcatgtggaagttattgtcaacctagaccctacatgt |
37316316 |
T |
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