View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3523_low_27 (Length: 254)
Name: NF3523_low_27
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_27 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold1808 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2942525 - 2942761
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagcttatatgtgaccactgtttaaaca |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaactaatgacctgtgactatcttataacttatatgtgaccactgcttaaaca |
2942624 |
T |
|
| Q |
101 |
tgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2942625 |
tgcattatattgtttattttggcaggataaaaagttgaattatgtaaaaggatgcgagaggatttgaagaagaaagacaaggaaaataaatttgtagagc |
2942724 |
T |
|
| Q |
201 |
gtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2942725 |
gtcaacaacttggagcaaaaataatcaagcagaaaac |
2942761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6684894 - 6684658
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagcttatatgtgaccactgtttaaaca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| || |
|
|
| T |
6684894 |
cttactcttggttatgtataattgttgcataatttatgttcccagctcaactaatgacctgtgactatcttatagtttatatgtgaccactgcttaagca |
6684795 |
T |
|
| Q |
101 |
tgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaac |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6684794 |
tgcattatattgtctattttggcaggacaaaaagttgaatactgtaaaaggatgcaagaagatttgaagaagaaagacgaggaaaataaatttgtagagt |
6684695 |
T |
|
| Q |
201 |
gtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6684694 |
gtcaacaacttggagcaaaaataatcaagcagaaaac |
6684658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 12592568 - 12592336
Alignment:
| Q |
5 |
ctcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagcttatatgtgaccactgtttaaacatgca |
104 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
12592568 |
ctcttggttatgtataattattgcttaatttctgttcccagctcaactaatgacctgtgactatcttatagcttatatgtgacctttgcttaagcatgca |
12592469 |
T |
|
| Q |
105 |
ttatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaacgtca |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
12592468 |
ttgtattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagagcatca |
12592369 |
T |
|
| Q |
205 |
acaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |
|
|
| T |
12592368 |
acaactaggagcaaaaagaatcaagcggaaaac |
12592336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 30821869 - 30821714
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagcttatatgtgaccactgtttaaaca |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| | || || |
|
|
| T |
30821869 |
cttactcttggttatttataattgttgcttaatttctgttcc-agctcaactaatgacctgtgactatcttatagctt-------accactgctgaagca |
30821778 |
T |
|
| Q |
101 |
tgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30821777 |
tgcattatattgtttattttggcaggacaaaaagttgaataccgtaaaaggatgcgagaagatt |
30821714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 17719135 - 17719271
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
17719135 |
catgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
17719231 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatc-aagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
17719232 |
gtgtcaacaacttggaacaaaaagaatcaaagcagaaaac |
17719271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 14668756 - 14668890
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
14668756 |
catgcattatattgtttattttggtaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaattt-taga |
14668851 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14668852 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
14668890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30812607 - 30812529
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagctta |
79 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30812607 |
cttactcttggttatttataattgttgcttaatttatgttcccagctcaactaatgacatgtgactatcttatagctta |
30812529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51759494 - 51759259
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactatcttatagcttatatgtgaccactgtttaaaca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| || |
|
|
| T |
51759494 |
cttactcttggttatgtataattgttgcttaatttatgttcccagctcacctaatgacatgtgactatcttatagtttatatgtgacaactacttaagca |
51759395 |
T |
|
| Q |
101 |
tgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaac |
200 |
Q |
| |
|
| ||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759394 |
tccattatattatttattttggcaggataaaaagttgaatactgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagagt |
51759295 |
T |
|
| Q |
201 |
gtcaacaacttggagcaaaaagaatcaagcagaaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759294 |
gtcaacaacttggagcaaaaagaatcaagcagaaaa |
51759259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 15514373 - 15514198
Alignment:
| Q |
62 |
tgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaag |
161 |
Q |
| |
|
|||||||||||||| |||||||||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
15514373 |
tgactatcttatagtttatatgtgattactgcttaagtatgtattatattgtttattttggcaagacaaaaagttgaatactataaaaggatgcgagaag |
15514274 |
T |
|
| Q |
162 |
atttgaagaagaaagacaaggaaaataaatttgtagaacgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15514273 |
atttgaagaagaaagataaggaaaataaatttgtagagcgtcaacaacttggagcaaaaagaatcaagcaaaaaac |
15514198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 30267655 - 30267530
Alignment:
| Q |
60 |
tgtgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgaga |
159 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||| | |||||||||| |||| |
|
|
| T |
30267655 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttggcagaacaaaaagttgaatactataaaaggatgtgaga |
30267556 |
T |
|
| Q |
160 |
agatttgaagaagaaagacaaggaaaa |
186 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
30267555 |
agatttgaagaagaaaga-aaggaaaa |
30267530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 15539030 - 15539143
Alignment:
| Q |
122 |
gcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaacgtcaacaacttggagcaaaaa |
221 |
Q |
| |
|
|||| |||||||||||||| | |||||||||| |||||||||||||||||||| |||||||| | ||||||||||| | |||||||| |||| ||||| |
|
|
| T |
15539030 |
gcagaacaaaaagttgaatactctaaaaggatgtgagaagatttgaagaagaaacacaaggaagacaaatttgtagagcatcaacaacatggataaaaaa |
15539129 |
T |
|
| Q |
222 |
gaatcaagcagaaa |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15539130 |
gaatcaagcagaaa |
15539143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 44921788 - 44921673
Alignment:
| Q |
70 |
ttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaag |
169 |
Q |
| |
|
|||||| ||||||||| ||| | |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
44921788 |
ttatagtttatatgtgcccaatacttaagaatgcattatattgtttattttggcataacaaaaagttgaatactgtaaaaggatgtgagaagatttgaag |
44921689 |
T |
|
| Q |
170 |
aagaaagacaaggaaaa |
186 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
44921688 |
aagaaaga-aaggaaaa |
44921673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 10022758 - 10022583
Alignment:
| Q |
62 |
tgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaag |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
10022758 |
tgactatcttataatttatatgtgaccactgattaagcatgcattatattgtttattttggtaaaacaaaaagttgaatactgtaaaaggatgcgaaaag |
10022659 |
T |
|
| Q |
162 |
atttgaagaagaaagacaaggaaaataaatttgtagaacgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
10022658 |
atttgaagaagaaagacaagaaaaagaaatttgtagagcgtccacaacttagagcaaaaagaatcaagcagaaaac |
10022583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 19747291 - 19747123
Alignment:
| Q |
60 |
tgtgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgaga |
159 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||| |
|
|
| T |
19747291 |
tgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgaga |
19747192 |
T |
|
| Q |
160 |
agatttgaagaagaaagacaaggaaaataaatttgtagaacgtcaacaacttggagcaaaaagaatcaa |
228 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19747191 |
agatttgaagaagaaagagaaggaaaagaaatttgtagagtgtcaacaacttggagcaaaaagaatcaa |
19747123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 9241896 - 9242031
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9241896 |
catgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
9241992 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9241993 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
9242031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 27810549 - 27810411
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
27810549 |
catgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgtgaaaagattagaagaaaaaagacaaggaaaatatatttgtaga |
27810450 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27810449 |
gcgtcaacaacttggagcaaaaagaatcaagcagaaaac |
27810411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 18767584 - 18767449
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
18767584 |
catgcattatattgtttattttggcaggacaaaaagttcaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
18767488 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18767487 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
18767449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 19449135 - 19449006
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
19449135 |
catgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
19449039 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagca |
231 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |
|
|
| T |
19449038 |
gtgtcaacaagttggaacaaaaagaatcaagca |
19449006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 19531941 - 19532070
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
19531941 |
catgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
19532037 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagca |
231 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |
|
|
| T |
19532038 |
gtgtcaacaagttggaacaaaaagaatcaagca |
19532070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27810619 - 27810552
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaactaatgacatgtgactat |
68 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27810619 |
cttactcttggttatttataattgttgcttaatttctgttcccatctcaactaatgacatgtgactat |
27810552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 17038236 - 17038098
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17038236 |
catgcattatattgtttattttggcaggccaaatagttgaatactgtaaaaggattcaagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
17038137 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17038136 |
gtgtcaacaacttggagcaaaaagaatcaagcagaaaac |
17038098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 23615970 - 23616105
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
23615970 |
catgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
23616066 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23616067 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
23616105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 23847366 - 23847501
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
23847366 |
catgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
23847462 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23847463 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
23847501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26357659 - 26357608
Alignment:
| Q |
1 |
cttactcttgattatgtataattgttgcttaatttctgttcccagctcaact |
52 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
26357659 |
cttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
26357608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 40422413 - 40422331
Alignment:
| Q |
122 |
gcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaacgtca |
204 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||| |||||||||||| |||||||||| ||||| |||| || ||||| |
|
|
| T |
40422413 |
gcagaacaaaaagctgaatactataaaaggatgcgagaggatttgaagaaggcagacaaggaagataaacttgtggagcgtca |
40422331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 40110 - 40245
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
40110 |
catgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
40206 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40207 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
40245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 1684370 - 1684505
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtaga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1684370 |
catgcattatattgtttattttggcaggacaaaaagttgaatactataaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtaga |
1684466 |
T |
|
| Q |
199 |
acgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1684467 |
gtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
1684505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 8142827 - 8142963
Alignment:
| Q |
99 |
catgcattatattgtttattttggcaggacaaaaa-gttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
8142827 |
catgcattatattgtttattttggcaggataaaaaagttgaataccgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgtag |
8142923 |
T |
|
| Q |
198 |
aacgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
8142924 |
agtgtcaacaagttggaacaaaaagaatcaagcagaaaac |
8142963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 47065484 - 47065607
Alignment:
| Q |
62 |
tgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgagaag |
161 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||| | |||||||||| |||||| |
|
|
| T |
47065484 |
tgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttggcagaacaaaaagttgaatactataaaaggatgtgagaag |
47065583 |
T |
|
| Q |
162 |
atttgaagaagaaagacaaggaaaa |
186 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
47065584 |
atttgaagaagaaaga-aaggaaaa |
47065607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 53301005 - 53300880
Alignment:
| Q |
60 |
tgtgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgaga |
159 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||| ||||||||||| ||||||||| |||||||||||||| | |||||||| | |||| |
|
|
| T |
53301005 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcgttatattgtttgttttggcagaacaaaaagttgaatactataaaaggacgtgaga |
53300906 |
T |
|
| Q |
160 |
agatttgaagaagaaagacaaggaaaa |
186 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
53300905 |
agatttgaagaagaaaga-aaggaaaa |
53300880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 25908615 - 25908697
Alignment:
| Q |
122 |
gcaggacaaaaagttgaattatgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaacgtca |
204 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||| |||||||||||| |||||||||| | ||| ||||||| ||||| |
|
|
| T |
25908615 |
gcagaacaaaaagctgaatactataaaaggatgcgagaggatttgaagaaggcagacaaggaagacaaacttgtagagcgtca |
25908697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 1127 - 1008
Alignment:
| Q |
57 |
acatgtgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcg |
156 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||| ||| |||||||||||| | |
|
|
| T |
1127 |
acatgtgattatgttatagtttatatgtgaccactacttaagcatgcattatattgtt-attttggcagaacaaaaagtttaatactgtaaaaggatgtg |
1029 |
T |
|
| Q |
157 |
agaagatttgaagaagaaaga |
177 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1028 |
agaagatttgaagaagaaaga |
1008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 67 - 192
Alignment:
| Q |
60 |
tgtgactatcttatagcttatatgtgaccactgtttaaacatgcattatattgtttattttggcaggacaaaaagttgaattatgtaaaaggatgcgaga |
159 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||| | |||||||||| |||| |
|
|
| T |
67 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttgccagaacaaaaagttgaatactataaaaggatgtgaga |
166 |
T |
|
| Q |
160 |
agatttgaagaagaaagacaaggaaaa |
186 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
167 |
agatttgaagaagaaaga-aaggaaaa |
192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 204 - 295
Alignment:
| Q |
143 |
tgtaaaaggatgcgagaagatttgaagaagaaagacaaggaaaataaatttgtagaacgtcaacaacttggagcaaaaagaatcaagcagaaaac |
237 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
204 |
tgtaaaaggatgc---aagatttgataaagaaagagaaggaaaataaatttgtagagtgtcaacaacttggaacaaaaagaatcaagcagaaaac |
295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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