View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_34 (Length: 219)
Name: NF3523_low_34
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 20455161 - 20455109
Alignment:
| Q |
144 |
ctgaagcgtgatctgggaagcttgtagcagaagagttgtacgaattagggttt |
196 |
Q |
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| T |
20455161 |
ctgaagcgtgatctgggaagcttgtagcagaagagttgtacgaattagggttt |
20455109 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 20455284 - 20455237
Alignment:
| Q |
21 |
aaaacaaattaaagtcctgcaaaacagaagagttagacaaattgaacg |
68 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20455284 |
aaaacaaattaaattcctgcaaaacagaagagttagacaaattgaacg |
20455237 |
T |
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