View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3523_low_35 (Length: 217)

Name: NF3523_low_35
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3523_low_35
NF3523_low_35
[»] chr1 (6 HSPs)
chr1 (12-217)||(3534515-3534720)
chr1 (62-104)||(12772146-12772188)
chr1 (67-147)||(9007773-9007854)
chr1 (62-107)||(15381849-15381894)
chr1 (58-103)||(44622808-44622853)
chr1 (132-177)||(52363015-52363060)
[»] chr4 (2 HSPs)
chr4 (85-177)||(924333-924425)
chr4 (67-127)||(4045052-4045112)
[»] chr3 (1 HSPs)
chr3 (67-126)||(55195845-55195904)
[»] chr7 (2 HSPs)
chr7 (67-109)||(34807844-34807886)
chr7 (62-104)||(45199858-45199900)
[»] chr5 (1 HSPs)
chr5 (62-104)||(4985833-4985875)
[»] chr2 (1 HSPs)
chr2 (64-154)||(12126238-12126327)
[»] chr8 (1 HSPs)
chr8 (85-126)||(35149909-35149950)
[»] chr6 (1 HSPs)
chr6 (67-127)||(15126293-15126353)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 3534720 - 3534515
Alignment:
Q  12 ccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtagtttaatggttagaaatcactttttaagatgaataaatgagtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3534720 ccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtagtttaatgattagaaatcactttttaagatgaataaatgagtt 3534621  T
Q  112 gtttggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagttatgttcaaagatacattattaggtttattatattctatgca 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3534620 gtttggagttcgaaccaaaaccctacatataacaattcattatttttgtctactgagttatgttcaaggatacattattaggtttattatattctatgca 3534521  T
Q  212 aaaaca 217  Q
    ||||||    
T  3534520 aaaaca 3534515  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 12772188 - 12772146
Alignment:
Q  62 tcaagtagtttaatggttagaaatcactttttaagatgaataa 104  Q
    |||||||||||||||||||||| |||| ||||||| |||||||    
T  12772188 tcaagtagtttaatggttagaattcaccttttaaggtgaataa 12772146  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 9007773 - 9007854
Alignment:
Q  67 tagtttaatggttagaaatcacttttt-aagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaat 147  Q
    ||||||| ||| ||||| ||||||||| ||| |||||||||||| |||| || ||||||| |  |||||||| |||||||||    
T  9007773 tagtttattggctagaattcactttttcaaggtgaataaatgagatgttcggggttcgaatcccaaccctacatataacaat 9007854  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 15381849 - 15381894
Alignment:
Q  62 tcaagtagtttaatggttagaaatcactttttaagatgaataaatg 107  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||    
T  15381849 tcaaatagtttaatgattagaattcactttttaagataaataaatg 15381894  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 44622808 - 44622853
Alignment:
Q  58 ttgatcaagtagtttaatggttagaaatcactttttaagatgaata 103  Q
    ||||||||||||| |||| ||||||| | |||||||||||||||||    
T  44622808 ttgatcaagtagtataattgttagaatttactttttaagatgaata 44622853  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 52363060 - 52363015
Alignment:
Q  132 ccctacctataacaattcattatttctgtcaactgagttatgttca 177  Q
    |||||| ||||||||| |||||||||||||||||||  ||||||||    
T  52363060 ccctacatataacaatgcattatttctgtcaactgaactatgttca 52363015  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 924333 - 924425
Alignment:
Q  85 tcactttttaagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagttatgttca 177  Q
    |||||||||||| |||||||||||  ||||  | |||||||||  | ||||   ||||||||| |||||| ||||||||||||| ||||||||    
T  924333 tcactttttaaggtgaataaatgaaatgttcagggttcgaaccttatccctgtatataacaatacattatctctgtcaactgagatatgttca 924425  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 4045052 - 4045112
Alignment:
Q  67 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaacc 127  Q
    ||||||||| ||||||| |||||||||||  ||||||| || | ||||||| |||||||||    
T  4045052 tagtttaattgttagaattcactttttaaagtgaataagtggggtgtttggggttcgaacc 4045112  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 55195845 - 55195904
Alignment:
Q  67 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaac 126  Q
    |||| ||||||||| || |||| || ||||||||||||||||| |||| |||||||||||    
T  55195845 tagtctaatggttataattcaccttataagatgaataaatgaggtgttcggagttcgaac 55195904  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 34807886 - 34807844
Alignment:
Q  67 tagtttaatggttagaaatcactttttaagatgaataaatgag 109  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  34807886 tagtttaatggttagaattcattttttaagatgaataactgag 34807844  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 45199858 - 45199900
Alignment:
Q  62 tcaagtagtttaatggttagaaatcactttttaagatgaataa 104  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||    
T  45199858 tcaagtagtctaatggttagaattcactttttaaaatgaataa 45199900  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 4985875 - 4985833
Alignment:
Q  62 tcaagtagtttaatggttagaaatcactttttaagatgaataa 104  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||    
T  4985875 tcaagtagtctaatggatagaattcactttttaagatgaataa 4985833  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 12126238 - 12126327
Alignment:
Q  64 aagtagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaattcattat 154  Q
    |||||||||| ||||||||| ||| |||| |||||||||||||||| | |||| ||||| || |  |||| ||| ||||||||| ||||||    
T  12126238 aagtagtttagtggttagaattcaatttt-aagatgaataaatgaggtatttgaagttcaaaacgcaaccgtacatataacaatgcattat 12126327  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 35149950 - 35149909
Alignment:
Q  85 tcactttttaagatgaataaatgagttgtttggagttcgaac 126  Q
    |||| ||||| |||||||||||||||||||||| ||||||||    
T  35149950 tcaccttttatgatgaataaatgagttgtttggggttcgaac 35149909  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 15126353 - 15126293
Alignment:
Q  67 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaacc 127  Q
    ||||||||||||||||| |||| || |||| |||||||||| | |||  ||||||||||||    
T  15126353 tagtttaatggttagaattcaccttataaggtgaataaatggggtgtccggagttcgaacc 15126293  T

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