View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_5 (Length: 557)
Name: NF3523_low_5
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 39643922 - 39644477
Alignment:
| Q |
1 |
cgttttatcggagaactggaagatgggaatcacatatctggttcgtgcactttgtgttcattttactattttagcctttctcgtannnnnnnactcgcac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
39643922 |
cgttttatcggagaactggaagatgggaatcacatatctggttcgtgcacttcgtgttcattttactattttagcctttctcgtatttttttactcgcac |
39644021 |
T |
|
| Q |
101 |
cggatcatataaaatgtctctgcattttatcatcgt---------------tatggtggaaagtgattataatttttgtgagaattttgaatttggatag |
185 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39644022 |
cggatcatataaaatgtctctgcattttatcatcttagttgtacttactcttatggtggaaagtggttataatttttgtgagaattttgaatttggatag |
39644121 |
T |
|
| Q |
186 |
ttgaataatatctaacttgttttatttggtggttgtattttgtannnnnnnnnnnnnnnna----atgtagggattgtgggaagcaagtttatttaggta |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39644122 |
ttgaataatatctaacttgttttatttggtggttgtgttttgtattttttaatttttttttttttatgtagggattgtgggaagcaagtttatttaggta |
39644221 |
T |
|
| Q |
282 |
atgaatttgtattttgattaatttcatttcatttatgttgaagtatttattatatgcttctttgctatttttggaaagttttatgaaatttgtatttggg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39644222 |
atgaatttgtattttgattaatttcatttcatttatgttgaagtatttattatatgcttctttgctatttttggaaagttttatgaaatttgtatttggg |
39644321 |
T |
|
| Q |
382 |
cttgtaggtggatttgacacggctcatgctgctgctaggtaaaatttctgcacaaatttaatattatgctttcattgactttaagatattaagatagtga |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
39644322 |
cttgtaggtggatttgacacggctcatgctgctgctaggtaaaatttctgcacaaatttaataatttgctttcattgactttaagatattaagatagtga |
39644421 |
T |
|
| Q |
482 |
tttgattatagatcattgacttggaattttttaaatacagagcctatgatcgagctg |
538 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39644422 |
tttgattatagatcattgacttggaatttttt-aatacagagcctatgatcgagctg |
39644477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 21890977 - 21890936
Alignment:
| Q |
383 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
424 |
Q |
| |
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| T |
21890977 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
21890936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 46007709 - 46007750
Alignment:
| Q |
383 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
424 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
46007709 |
ttgtaggtggatttgacacagttcatgctgctgctaggtaaa |
46007750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 22616911 - 22616870
Alignment:
| Q |
383 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
424 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22616911 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
22616870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 22617076 - 22617043
Alignment:
| Q |
248 |
tgtagggattgtgggaagcaagtttatttaggta |
281 |
Q |
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|
||||||||||||||||| |||||||||||||||| |
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| T |
22617076 |
tgtagggattgtgggaaacaagtttatttaggta |
22617043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22617271 - 22617226
Alignment:
| Q |
1 |
cgttttatcggagaactggaagatgggaatcacatatctggttcgt |
46 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| |||||||||||||| |
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|
| T |
22617271 |
cgttttatcgcaggactggtagatgggaatcgcatatctggttcgt |
22617226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 41049413 - 41049454
Alignment:
| Q |
383 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
424 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41049413 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
41049454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 13621384 - 13621426
Alignment:
| Q |
383 |
ttgtaggtggatttgacacggctcatg-ctgctgctaggtaaa |
424 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
13621384 |
ttgtaggtggatttgacacagctcatgcctgctgctaggtaaa |
13621426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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