View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_6 (Length: 490)
Name: NF3523_low_6
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 43095176 - 43094737
Alignment:
| Q |
14 |
gaacctgtgatatatatcttgagagctagatgatttctttattgcctctttgttgtgtgtaaagactaaggattatattgttaaatagtaggtatttgga |
113 |
Q |
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| T |
43095176 |
gaacctgtgatatatatcttgagagctagatgatttctttattgcctctttattgtgcgtaaagactaaggattatattgttaaatagtagatatttgga |
43095077 |
T |
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| Q |
114 |
ttcaattttagtagagtcaaaagtgattttgaagagttaaaattaattctaagttagaagttagaaattgcaatttagtctgcaaatttgatttcaaaat |
213 |
Q |
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| T |
43095076 |
ttcaattttagtagagtcaaaagtgattttgaagagttaaaattaattctaagttagaagttagaaatttcaatttagtctgcaaatttgatttcaacat |
43094977 |
T |
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| Q |
214 |
ttaaatttattgttcgagtttcacattgcataa------aatattgtaacataaagtcacttctaattaaaatcaattttacgaaatcaatttttgattt |
307 |
Q |
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| T |
43094976 |
ttaaatttattgttcaagtttcacattacataaaacattaacattgtaacataaagtcacttctaacta--------------aaatcaatttttgatgt |
43094891 |
T |
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| Q |
308 |
gatagaataaaacacagttagcaatagtaggtatttaaatagagaattgtaataaatcctatagagctgtctaaacacagttgtggggaattgacttttg |
407 |
Q |
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| T |
43094890 |
gatagaataaaacacagttagcaatagtaggtatttaaatagagaattgtgataaatcctatagagctgtctaaacacagttgtggggaattgac----- |
43094796 |
T |
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| Q |
408 |
catgtgtttttgctaacagcggggtggataagatatcatgacacagtcttgttcctgccccaccct |
473 |
Q |
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| T |
43094795 |
-------ttttgctaacagcggggtggataagatatcatgacacagtcttgttcctgccccaccct |
43094737 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 35728845 - 35728892
Alignment:
| Q |
110 |
tggattcaattttagtagagtcaaaagtgattttgaagagttaaaatt |
157 |
Q |
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| T |
35728845 |
tggattcacttttggaagagtcaaaagtgattttgaagaattaaaatt |
35728892 |
T |
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