View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_low_7 (Length: 490)
Name: NF3523_low_7
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 148 - 472
Target Start/End: Original strand, 21145085 - 21145408
Alignment:
| Q |
148 |
cattgccgattcaaccactttgttcctatatataccctaataattaaaccatacaaacccttcatttgttccaatcgtcgttactactcatgtttataat |
247 |
Q |
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| T |
21145085 |
cattgccgattcaaccactttgttcatatatataccctaataattaaaccatacaaacccttcatttgttccaaacgtcattactactcatgtttataat |
21145184 |
T |
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| Q |
248 |
ttaccacttttctgctgcttttatggactcactgttgttggacttgttttctctgttctcagtccatttcatagcatcaaaataacaagaaaaatgtttt |
347 |
Q |
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| T |
21145185 |
ttaccacttttctgctgcttttatggactcactgttgttggacttgttttctctgttctcattccatttcatagcatcaaaataacaagaaaaatgttta |
21145284 |
T |
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| Q |
348 |
gtttagtttagtgtacaccccatgtgggggcgtgtacaccttaaaataaaatgaagagaaagaaatgagtta----tttgatagatgtggtaggattagg |
443 |
Q |
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| T |
21145285 |
gtttagtttagtgtacaccccatgtgggggtgtatacacct-----taaaatgaagagaaagaaatgagttagttttttgatagatgtggtaggattagg |
21145379 |
T |
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| Q |
444 |
aagagatacatagataaattgaggtgttc |
472 |
Q |
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| T |
21145380 |
aagagatatatagataaattgaggtgttc |
21145408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 21144945 - 21145056
Alignment:
| Q |
9 |
agcataggaatttgtatcgaagaatggtggagtctgttaaagtaaacgagttggaagtcaccttaaagcctttctatcgaagagcttctgaagctgaggt |
108 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21144945 |
agcagaggaatttgtatcgaagaatggtcgagtctgttaaagtaaacgagttggaagtcaccttaaagcctttctatcgaagagcttctgaagctgaggt |
21145044 |
T |
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| Q |
109 |
cactactcattc |
120 |
Q |
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| T |
21145045 |
cactactcattc |
21145056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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