View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3523_low_9 (Length: 423)
Name: NF3523_low_9
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 7010158 - 7010570
Alignment:
| Q |
1 |
tggtcgttggaatttgatcaggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7010158 |
tggtcgttggaatttgatcaggatccaacaactacatgatgtgccggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacaa |
7010257 |
T |
|
| Q |
101 |
gcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010258 |
gcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggata |
7010357 |
T |
|
| Q |
201 |
ctatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010358 |
ctatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttac |
7010457 |
T |
|
| Q |
301 |
ccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010458 |
ccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatata |
7010557 |
T |
|
| Q |
401 |
tgcaccacccttt |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7010558 |
tgcaccacccttt |
7010570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 7007090 - 7007492
Alignment:
| Q |
1 |
tggtcgttggaatttgatcaggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacga |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||||||| || | ||||||| |||||||| ||| |
|
|
| T |
7007090 |
tggtcgttggaatttgatatggatccaacaactgcatgatgtgccgactccgtgaatgcggagaatttctgacttcagataatccgaatttgtgtttcga |
7007189 |
T |
|
| Q |
101 |
gcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggata |
200 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007190 |
gtgatgaagtttgtagggttgatgtgttaatttgtt----------ttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggata |
7007279 |
T |
|
| Q |
201 |
ctatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007280 |
ctatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttac |
7007379 |
T |
|
| Q |
301 |
ccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007380 |
ccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatt |
7007479 |
T |
|
| Q |
401 |
tgcaccacccttt |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7007480 |
tgcaccacccttt |
7007492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1358572 - 1358791
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1358672 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1358771 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1358772 |
agtttcattgcacacacacc |
1358791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1374124 - 1374343
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1374224 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1374323 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1374324 |
agtttcattgcacacacacc |
1374343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1394671 - 1394890
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1394771 |
ttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatc |
1394870 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1394871 |
agtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1350666 - 1350885
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1350766 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1350865 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1350866 |
agtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1384320 - 1384539
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1384420 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1384519 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1384520 |
agtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 1390425 - 1390644
Alignment:
| Q |
158 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
257 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
|
| Q |
258 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1390525 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1390624 |
T |
|
| Q |
358 |
agtttcattgctcacacacc |
377 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1390625 |
agtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University