View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3524_high_3 (Length: 219)
Name: NF3524_high_3
Description: NF3524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3524_high_3 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 14933427 - 14933636
Alignment:
| Q |
11 |
cagagagcccttttctactatttcgtggaggcagaagttgatccagcttcaaaaccagtagtattatggttaaacggaggtacataactgcgttcatttt |
110 |
Q |
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| T |
14933427 |
cagagagcccttttctactatttcgtagaagcagaagttgatccagcttcaaaaccagtagtattatggttaaacggaggtacgtaactgcgttcatttt |
14933526 |
T |
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| Q |
111 |
acctaatctactacttttcttttcaaaacataactacattctcaaaaaatttgaccctaaca-nnnnnnnacattctggtggcatgtctagtttttgtca |
209 |
Q |
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| T |
14933527 |
acctaatctactacttttcttttcaaatcataactacattctcaaaacatttgaccctaacattttttttacattctggtggcatgtctagtttttgtta |
14933626 |
T |
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| Q |
210 |
caagtttctc |
219 |
Q |
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| T |
14933627 |
caagtttctc |
14933636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 19984395 - 19984464
Alignment:
| Q |
23 |
ttctactatttcgtggaggcagaagttgatccagcttcaaaaccagtagtattatggttaaacggaggta |
92 |
Q |
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| T |
19984395 |
ttctactactttgtagaggcagatgtagatcctgcttcaaaaccagttgtactctggttaaacgaaggta |
19984464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 6477 - 6546
Alignment:
| Q |
23 |
ttctactatttcgtggaggcagaagttgatccagcttcaaaaccagtagtattatggttaaacggaggta |
92 |
Q |
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| T |
6477 |
ttctactattttgtagaggcagaggtagatcctgcttcaaaaccagttgtactctggttaaacggtggta |
6546 |
T |
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