View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3524_low_1 (Length: 409)
Name: NF3524_low_1
Description: NF3524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3524_low_1 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 51999906 - 51999517
Alignment:
| Q |
18 |
gagagtacatctattctctctttaaacacgaaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatttacaagtttgactt |
117 |
Q |
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| T |
51999906 |
gagagtacatctattctctctttaaacacgaaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatttacaagtttgactt |
51999807 |
T |
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| Q |
118 |
gattaaattcaaaagttgagatcggacatggaggaaatgatcaaagttaaacctgtgaattctaaactcactccagaaaacatcatcaatgactcaagaa |
217 |
Q |
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| T |
51999806 |
gattaaattcaaaagttgagatcggacatggaggaaatgatcaaagttaaacctgtgaattctaaactcactccagaaaacatcatcaatgactcaagaa |
51999707 |
T |
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| Q |
218 |
gatccaactgttccatgtttagtgagagaatatatgtactctctagttttctctaggtaatacttgagaagtttcctcgggattttagtgatagcttcat |
317 |
Q |
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| T |
51999706 |
gatccaatcgttccatgtttagtgagagaatatatgcactctctagttttctctaggtaatacttgagaagtttcctcgggattttaatgatagcttcat |
51999607 |
T |
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| Q |
318 |
tactaaagggactatttctcataaacctttgttttctctcagtgatttctgtcggtggccagatataccaaactgatcccatgtttcttc |
407 |
Q |
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| T |
51999606 |
tactaaagggactatttctcataaacctttgttttctctcagtgatatctgtcggtggccagatataccaaactgatcccatgtttcttc |
51999517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 372
Target Start/End: Original strand, 51999807 - 52000020
Alignment:
| Q |
161 |
aagttaaacctgtgaattctaaactcactccagaaaacatcatcaatgactcaagaagatccaactgttccatgtttagtgagagaatatatgtactctc |
260 |
Q |
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| T |
51999807 |
aagtcaaacttgtaaattttaaactaactccagaaaatgtcatcgatgactcgggaagatcccattatttcgtgtttaaagagagaatagatgtactctc |
51999906 |
T |
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| Q |
261 |
-tagttttctctaggtaatacttgagaagtttcctcgggat-tttagtgatagcttcattactaaagggactatttctcataaacctttgttttctctca |
358 |
Q |
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||||| ||||||||| ||||| ||||||||| |||| || | || ||||||||||| || |||||||||||||| ||||||| ||||| ||| |
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| T |
51999907 |
agcgttttttctaggtaaaacttgggaagtttccataggatcttcaatgctagcttcattaatattgggactatttctcagaaaccttcgttttatcttt |
52000006 |
T |
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| Q |
359 |
gtgatttctgtcgg |
372 |
Q |
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| T |
52000007 |
gtgacttctgtcgg |
52000020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 336
Target Start/End: Original strand, 13686 - 13797
Alignment:
| Q |
227 |
gttccatgtttagtgagagaatatatgtactctcta-gttttctctaggtaatacttgagaagtttcctcgggatttt-agtgatagcttcattactaaa |
324 |
Q |
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|||||||||||| |||||||| ||||| | ||||| ||||||||| ||||||||||||||| || || || |||||| |||| |||||||||||| ||| |
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| T |
13686 |
gttccatgtttaatgagagaacatatgaattctctttgttttctcttggtaatacttgagaatttcccacgagattttgagtgctagcttcattaccaaa |
13785 |
T |
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| Q |
325 |
gggactatttct |
336 |
Q |
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| T |
13786 |
aggactatttct |
13797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 13283 - 13173
Alignment:
| Q |
227 |
gttccatgtttagtgagagaatatatgtactctcta-gttttctctaggtaatacttgagaagtttcctcgggattttagtgatagcttcattactaaag |
325 |
Q |
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|||||||||||| |||||||| ||||| | ||||| ||||||||| ||||||||||||||| || || |||||||| |||| |||| ||||||| || |
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| T |
13283 |
gttccatgtttaatgagagaacatatgcattctcttcgttttctcttggtaatacttgagaatttcccacgggatttgagtgctagcatcattacccaaa |
13184 |
T |
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| Q |
326 |
ggactatttct |
336 |
Q |
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||||||||||| |
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| T |
13183 |
ggactatttct |
13173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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