View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3524_low_2 (Length: 332)
Name: NF3524_low_2
Description: NF3524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3524_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 315
Target Start/End: Complemental strand, 46462486 - 46462200
Alignment:
| Q |
32 |
tctacagccacctttggttgctctttctgcccttcctgaataatgtaatgaaaaactata--atttattaaataatagtcatgactactttatatcatta |
129 |
Q |
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| T |
46462486 |
tctacaggtacctttggttgctctttctgcccttcctgataaatgtaatgaaaaactatataatttattaaatgatagcaatgactattttataccatta |
46462387 |
T |
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| Q |
130 |
acatgattctttaagcatatatcgttaacttgttgttacatatgattgttcgttctcaataaccaaatctattatacatgtacaaaaaatactaaatata |
229 |
Q |
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| T |
46462386 |
acatgattcttaaagcatatatcgttaacttgttgttacatatgatcgttcgttctcaataaccaaatctattatgcatgtacaaaaaatactaaatata |
46462287 |
T |
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| Q |
230 |
tgcaacctt-aaattttgttttctaaaacattacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcatgt |
315 |
Q |
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| T |
46462286 |
tgcaaccttaaaattttgttttctaaaacattacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcatgt |
46462200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 46451517 - 46451377
Alignment:
| Q |
24 |
taattgggtctacagccacctttggttgctctttctgcccttcctgaataatgtaatgaaaaactataatttattaaataatagtcatgactactttata |
123 |
Q |
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| T |
46451517 |
taattgggtctacaggcacctttggttgctctttctgcccttcctgaataatgtaatgaaaaactataatttattaaataatagtcatgactattttata |
46451418 |
T |
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| Q |
124 |
tcattaacatgattctttaagcatatatcgttaacttgttg |
164 |
Q |
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| T |
46451417 |
tcattaacatgattcttaaagcatataccattaacttgttg |
46451377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 46345251 - 46345411
Alignment:
| Q |
163 |
tgttacatatgattgttcgttctcaataaccaaatctattata--catgtacaaaaaa-tactaaatatatgcaa-------ccttaaattttgttttct |
252 |
Q |
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| T |
46345251 |
tgttacatatgattgttcgttcttagtaaacaaatcaaatatatgcatgtacaaaaaaatactaaatatatgtaatatgcacccttaaattttgtttcct |
46345350 |
T |
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| Q |
253 |
aaaacattacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcat |
313 |
Q |
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| T |
46345351 |
acaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcat |
46345411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 46451342 - 46451257
Alignment:
| Q |
227 |
atatgcaaccttaaattttgttttctaaaacattacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcat |
313 |
Q |
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| T |
46451342 |
atatgcaaccttaaattt-gttttcaaaaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcat |
46451257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 46345030 - 46345119
Alignment:
| Q |
24 |
taattgggtctacagccacctttggttgctctttctgcccttcctgaataatgtaatgaaaaactataatttattaaataatagtcatga |
113 |
Q |
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| T |
46345030 |
taattgggtctagaggcacctctgattgctctttctgctcttcctgaataatgtaatgaaaaattattattgattaaataacagtaatga |
46345119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 46470862 - 46470807
Alignment:
| Q |
258 |
attacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcat |
313 |
Q |
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| T |
46470862 |
attacctcagccatagatcgaactttcaagctagcattccttttaaagctaggcat |
46470807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 46471126 - 46471087
Alignment:
| Q |
40 |
cacctttggttgctctttctgcccttcctgaataatgtaa |
79 |
Q |
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| T |
46471126 |
cacctttggttgctctttctgcccttcctgaataatgtaa |
46471087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 46465664 - 46465609
Alignment:
| Q |
258 |
attacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcat |
313 |
Q |
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| T |
46465664 |
attacctcagccatggaccgaactttgaggttagcatttcttctgaagctaggcat |
46465609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 46465919 - 46465880
Alignment:
| Q |
40 |
cacctttggttgctctttctgcccttcctgaataatgtaa |
79 |
Q |
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| T |
46465919 |
cacctttgattgctctttctgcgcttcctgaataatgtaa |
46465880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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