View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3524_low_3 (Length: 260)
Name: NF3524_low_3
Description: NF3524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3524_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2326094 - 2326335
Alignment:
| Q |
1 |
tcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatac |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326094 |
tcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatat |
2326193 |
T |
|
| Q |
101 |
cggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326194 |
cggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttccc |
2326293 |
T |
|
| Q |
201 |
aatcacaaactcatatctagcaaccagcacaacatcagcgcc |
242 |
Q |
| |
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| T |
2326294 |
agtcacaaactcatatctagcaaccagcacaacatcagcgcc |
2326335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2329809 - 2330047
Alignment:
| Q |
1 |
tcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatac |
100 |
Q |
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|||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2329809 |
tcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatat |
2329908 |
T |
|
| Q |
101 |
cggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttccc |
200 |
Q |
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| T |
2329909 |
cggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctgatcgtcctaaagcacttccc |
2330008 |
T |
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| Q |
201 |
aatcacaaactcatatctagcaaccagcacaacatcagc |
239 |
Q |
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| | |||||||||| || |||||||||||||| |||||| |
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| T |
2330009 |
actaacaaactcatgtccagcaaccagcacaatatcagc |
2330047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 2350125 - 2350347
Alignment:
| Q |
17 |
atggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaataccggctccagaccttcc |
116 |
Q |
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||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||| || | | | | | |||||||| |
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| T |
2350125 |
atggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttcc |
2350224 |
T |
|
| Q |
117 |
atttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatat |
216 |
Q |
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|||| ||||||||||| | |||| ||||||||||||||||||||||| ||| | ||||||| ||||| |||| ||| ||||||| |||| |||| | |
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| T |
2350225 |
attttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctgatcgccctagagctcttcccaccgccaaaatcatct |
2350324 |
T |
|
| Q |
217 |
ctagcaaccagcacaacatcagc |
239 |
Q |
| |
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| |||||||| |||||||||||| |
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| T |
2350325 |
ccagcaaccaacacaacatcagc |
2350347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 2292934 - 2293118
Alignment:
| Q |
15 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaataccggctccagacctt |
114 |
Q |
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|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| || |||||| |
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| T |
2292934 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2293033 |
T |
|
| Q |
115 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcc |
199 |
Q |
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| T |
2293034 |
ccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctgatcgccctacagctcttcc |
2293118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 2320254 - 2320423
Alignment:
| Q |
15 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaataccggctccagacctt |
114 |
Q |
| |
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|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| || |||||| |
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| T |
2320254 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2320353 |
T |
|
| Q |
115 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcg |
184 |
Q |
| |
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|||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | ||||||| ||||| |
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| T |
2320354 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcg |
2320423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 2302558 - 2302701
Alignment:
| Q |
20 |
gctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaataccggctccagaccttccatt |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||| || ||||||||||| |
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| T |
2302558 |
gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt |
2302657 |
T |
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| Q |
120 |
tacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
163 |
Q |
| |
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| |||| |||| ||||||||||||||| | |||||||||||| |
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| T |
2302658 |
ttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 2309265 - 2309413
Alignment:
| Q |
15 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaataccggctccagacctt |
114 |
Q |
| |
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|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| || ||||| |
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| T |
2309265 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaacctt |
2309364 |
T |
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| Q |
115 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
163 |
Q |
| |
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|||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2309365 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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