View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3524_low_4 (Length: 226)
Name: NF3524_low_4
Description: NF3524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3524_low_4 |
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| [»] scaffold0075 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14934010 - 14934225
Alignment:
| Q |
1 |
ctgtatcaaatagtgaaaattgtcgccgactattttcataacatttttgaattgatctgagatgttttgtacttatgttttgttttggatcttgaaggac |
100 |
Q |
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| T |
14934010 |
ctgtatcaaatagtgaaaattgtcgccgactattttcataacatttttgaattgatctgagatgttttgtacttatgttttgttttggaccttgaaggac |
14934109 |
T |
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| Q |
101 |
cgggctgttcttcagtaggtcaaggttcattttcagagcatggtcctttcaagccaacaaggaaaggccttgtgaaaaactcattcagttggaacaaagg |
200 |
Q |
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| T |
14934110 |
cgggctgttcttcagtaggtcaaggttcattttcggagcatggtcctttcaagccaacaaggaaaggccttgtgaaaaactcattcagttggaacaaagg |
14934209 |
T |
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| Q |
201 |
taacataataagtctc |
216 |
Q |
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||||| || ||||||| |
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| T |
14934210 |
taacacaacaagtctc |
14934225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 11236 - 11351
Alignment:
| Q |
90 |
tcttgaaggaccgggctgttcttcagtaggtcaaggttcattttcagagcatggtcctttcaagccaacaaggaaaggccttgtgaaaaactcattcagt |
189 |
Q |
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| T |
11236 |
tcttcaaggacctggctgctcatcagttggccaaggtgccttttcagaacacggtcctttccggccaacaacaaagggtcttattaaaaacgccttcagt |
11335 |
T |
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| Q |
190 |
tggaacaaaggtaaca |
205 |
Q |
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| T |
11336 |
tggaacaaaggtaaca |
11351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 6621 - 6736
Alignment:
| Q |
90 |
tcttgaaggaccgggctgttcttcagtaggtcaaggttcattttcagagcatggtcctttcaagccaacaaggaaaggccttgtgaaaaactcattcagt |
189 |
Q |
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| T |
6621 |
tcttcaaggccctggctgctcatcagttcgtcaaggtgccttttcagaacacggtcctttccggccaacaacaaagggtcttgttaaaaacccgttcagt |
6720 |
T |
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| Q |
190 |
tggaacaaaggtaaca |
205 |
Q |
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| T |
6721 |
tggaacaaatgtaaca |
6736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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