View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3525_high_3 (Length: 373)
Name: NF3525_high_3
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3525_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 11173612 - 11173314
Alignment:
| Q |
1 |
aacaatgatccaatggtggggaatcagtactttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggt |
100 |
Q |
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| T |
11173612 |
aacaatgatccaatggtggggaatcagtactttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggt |
11173513 |
T |
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| Q |
101 |
cttcttcaatgaatgaaatttccttcagcaactctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagta |
200 |
Q |
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| T |
11173512 |
cttcttctatgaatgaaatttccttcagcaattctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagta |
11173413 |
T |
|
| Q |
201 |
tcctgatgggaacaacgagcttagacgtatcaaattcaggtaacatgcttatgtttaagctatttctatttaataaaagatagtatacgaaaatttcta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11173412 |
tcctgatgggaacaacgagcttagacgtatcaaattcaggtaacatgcttatgtttaagctatttctatataataaaagatagtatacgaaaatttcta |
11173314 |
T |
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