View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3525_high_7 (Length: 210)

Name: NF3525_high_7
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3525_high_7
NF3525_high_7
[»] chr2 (6 HSPs)
chr2 (11-207)||(39840096-39840292)
chr2 (44-143)||(39845046-39845143)
chr2 (154-209)||(44798259-44798314)
chr2 (154-210)||(35161796-35161852)
chr2 (76-127)||(44631200-44631251)
chr2 (76-127)||(44798180-44798231)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 39840292 - 39840096
Alignment:
Q  11 cagagattgactagtttcgattcttctgcgggagcttattctgcggggtttcagaggagcagcgggcattttttgacgtgcgtctgagagagaataagaa 110  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39840292 cagatattgactagttgcgcttcttctgcgggagcttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaa 39840193  T
Q  111 agaagaaccaattatgatagttatagaaattagacaacaataagataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcc 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39840192 agaagaaccaattatgatagttatagaaattagacaacgataagataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcc 39840096  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 39845143 - 39845046
Alignment:
Q  44 gcttattctgcggggtttcagaggagcagcgggcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattag 143  Q
    |||| ||||||||||||||||||||||||| |||||||||||| || ||||||| |||  |||||||||||||| |||||||||||||||||||||||||    
T  39845143 gcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgaaaga--ataagaaagaagaagcaattatgatagttatagaaattag 39845046  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 44798259 - 44798314
Alignment:
Q  154 gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44798259 gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccc 44798314  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 35161852 - 35161796
Alignment:
Q  154 gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccca 210  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35161852 gataagtgtgaattggggcttagggtttgttcaattactcaaaatccctaagcccca 35161796  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 44631200 - 44631251
Alignment:
Q  76 gcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatga 127  Q
    ||||||||||| || ||||||||||||||||| ||||||||| |||||||||    
T  44631200 gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga 44631251  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 44798180 - 44798231
Alignment:
Q  76 gcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatga 127  Q
    ||||||||||| || ||||||||||||||||| ||||||||| |||||||||    
T  44798180 gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga 44798231  T

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