View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3525_low_1 (Length: 524)
Name: NF3525_low_1
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3525_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 45546620 - 45546123
Alignment:
| Q |
18 |
tagttaacaatgaataccttctcagcccccaaggagaggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546620 |
tagttaacaatgaataccttctcagcccccaaggagaggttagaggttatgtaagagagtggaacacggtcagagtaaactgatctacttccactgttag |
45546521 |
T |
|
| Q |
118 |
atgatgaaattgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaagtaataaacatataaatatgattatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546520 |
atgatgaaattgaaccagagcttatagcagccattgcagcatccttaccttcagaatcatacctgcaacccaagtaataaacatataaatatgattatca |
45546421 |
T |
|
| Q |
218 |
tagacttaacttaaaaagggaacaataacctaggagacattggtataccagcatctgagcttctgagcttcaggtacttctggattgaccagaactaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546420 |
tagacttaacttaaaaagggaacaataacctaggagacattggtataccagcatctgagcttctgagcttcaggtacttctggattgaccagaactaaac |
45546321 |
T |
|
| Q |
318 |
ttctgcttatagctgacaaagaaatacctgacacagaaaacattcagcaatgagatatatgagcctt-ttttgcatcagtgttatacaataataagcaaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
45546320 |
ttctgcttatagctgacaaagaaatacctgacacagaaaacattcagcaatgagatatatgagcctttttttacatcagtgttatacaataataagcaaa |
45546221 |
T |
|
| Q |
417 |
gctttcacattgcaataccttgaaaatccccaaccttgagggatttgattgcaactactggagatttatcagccatgtcaagtaactcttgtcctatg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546220 |
gctttcacattgcaataccttgaaaatccccaaccttgagggatttgattgcaactactggagatttatcagccatgtcaagtaactcttgtcctatg |
45546123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 504
Target Start/End: Complemental strand, 45551191 - 45550705
Alignment:
| Q |
26 |
aatgaataccttctcagcccccaaggagaggttagagg-ttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| || |||||| | ||||||| |||| ||||||||||||| |
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|
| T |
45551191 |
aatgaataccttctcagcccccaaggaggggttagagggttatgtgagaaagtggaacacagttagagtacaatgatctaattccgctgttagatgatgg |
45551092 |
T |
|
| Q |
125 |
aattgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaagtaataaacatataaatatgattatcatagactt |
224 |
Q |
| |
|
|||||| ||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| || | |
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|
| T |
45551091 |
aattgatccagaccttaaagcaaccattgcagcatccttaccttcagaatcatacctgcagcccaaataataaacatataaatatgattaacataaacat |
45550992 |
T |
|
| Q |
225 |
aacttaaaaagggaacaataacctaggagacattggtataccagcatctgagcttctgagct--------tcaggtacttctggattgaccagaactaaa |
316 |
Q |
| |
|
| | ||| |||| |||||||||||||| |||| |||||||||||| |||||||||||||||| || ||||| |||||||||| || ||||||| |
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| T |
45550991 |
atcataacaaggaaacaataacctaggggacaatggtataccagcttctgagcttctgagcttccgagcctcgggtacatctggattgatcataactaaa |
45550892 |
T |
|
| Q |
317 |
cttctgcttatagctgacaaagaaatacctgacacagaaaacattcagcaatgagatatatgagccttttttgcatcagtgttatacaataataagcaaa |
416 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| |||||| ||||||| || ||||||| ||||||||| |||| ||||||| || |||||||| ||||| |
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|
| T |
45550891 |
cttctgtgcatagctgacagagaaacacctgaaacagaagacattcaacagtgagata-atgagccttgtttgaatcagtgctagacaataatcggcaaa |
45550793 |
T |
|
| Q |
417 |
gctttcacattgcaataccttgaaaatccccaaccttgagggatttgattgcaactactggagatttatcagccatgtcaagtaactc |
504 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||| |||||||||||||||||||| ||||||||||| || || |||||||| |
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|
| T |
45550792 |
actttcactttgcaatacctccaaagtcccaaaccttgacagatttgattgcaactactggggatttatcagcaatttccagtaactc |
45550705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 34743572 - 34743445
Alignment:
| Q |
54 |
aggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
153 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||| |||||| | ||||| | || || |||| ||||||| |||| || | ||||| ||||| |
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|
| T |
34743572 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattg |
34743473 |
T |
|
| Q |
154 |
cagcatctttaccttcagaatcatacct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |
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|
| T |
34743472 |
aagcatcactaccttcagaatcatacct |
34743445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 50134716 - 50134903
Alignment:
| Q |
26 |
aatgaataccttctcagcccccaaggagaggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaa |
125 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||||||||| | |||||| |||||||| |||||| | |||||| ||| ||||||| | |
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|
| T |
50134716 |
aatgaataccttctcagcccccga----aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgcttccattgtcggatgatgga |
50134811 |
T |
|
| Q |
126 |
attgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaagtaataaacatataaatatgattatcata |
219 |
Q |
| |
|
||||||| |||||||| || | ||||| |||||| |||||||||||||||||||| || |||| ||| || ||||||||||||||| |||| |
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|
| T |
50134812 |
attgaactagagcttaaagtggacattgaagcatcattaccttcagaatcatacctacataccaaataacaa--atataaatatgattaacata |
50134903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 42780924 - 42780854
Alignment:
| Q |
269 |
catctgagcttctgagcttcaggtacttctggattgaccagaactaaacttctgcttatagctgacaaaga |
339 |
Q |
| |
|
||||| ||||||| | |||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| |
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|
| T |
42780924 |
catcttagcttctaacattcaggtactactggattgatcagaactaaacttctgcatatagttgacaaaga |
42780854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 35167324 - 35167197
Alignment:
| Q |
54 |
aggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
153 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||| |||||| | ||||| | ||||| |||| ||||||| |||| || | ||||| ||||| |
|
|
| T |
35167324 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttagacgatggaattgaatcagatctcaaagcagacattg |
35167225 |
T |
|
| Q |
154 |
cagcatctttaccttcagaatcatacct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |
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|
| T |
35167224 |
aagcatcactaccttcagaatcatacct |
35167197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 504
Target Start/End: Original strand, 36871695 - 36871777
Alignment:
| Q |
422 |
cacattgcaataccttgaaaatccccaaccttgagggatttgattgcaactactggagatttatcagccatgtcaagtaactc |
504 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |||||| |||| ||||| || ||||| |
|
|
| T |
36871695 |
cacattgcaataccttgaaagtccccaaccttgaggtatttgattacagctactagggatttaccagcaatgtccagcaactc |
36871777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 21531383 - 21531256
Alignment:
| Q |
54 |
aggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
153 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||| |||||| | ||||| | || || |||| ||||||| |||| || | ||||| ||||| |
|
|
| T |
21531383 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattg |
21531284 |
T |
|
| Q |
154 |
cagcatctttaccttcagaatcatacct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
21531283 |
aagcatcactaccttcagaatcatacct |
21531256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 36871054 - 36871148
Alignment:
| Q |
283 |
agcttcaggtacttctggattgaccagaactaaacttctg----cttatagctgacaaagaaatacctgacacagaaaacattcagcaatgagat |
373 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| || | ||||||| |||||||| |||||| | |||| | ||||| ||||||||| |
|
|
| T |
36871054 |
agcttcaggtacttctggattgatcggaactaaacttgtgttaattaatagctgtcaaagaaacacctgaaaaagaacatattcaacaatgagat |
36871148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 17593730 - 17593857
Alignment:
| Q |
54 |
aggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
153 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||| |||||| | ||||| | || || |||| ||||||| |||| || | ||||| ||||| |
|
|
| T |
17593730 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattg |
17593829 |
T |
|
| Q |
154 |
cagcatctttaccttcagaatcatacct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
17593830 |
aagcatcactaccttcagaatcatacct |
17593857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 43313758 - 43313885
Alignment:
| Q |
54 |
aggttagaggttatgtaagaaagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattg |
153 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||| |||||| | ||||| | ||||| ||| ||||||| |||| || | ||||| ||||| |
|
|
| T |
43313758 |
aggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttagacaatggaattgaatcagatctcaaagcagacattg |
43313857 |
T |
|
| Q |
154 |
cagcatctttaccttcagaatcatacct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
43313858 |
aagcatcactaccttcagaatcatacct |
43313885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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