View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3525_low_4 (Length: 348)
Name: NF3525_low_4
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3525_low_4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 8094152 - 8093807
Alignment:
| Q |
1 |
taccataacttgtatatataaataacactcacgaactcaccaccaagctataaattgaattagcaatattaattacatacaccaaagtgaagcataggat |
100 |
Q |
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| T |
8094152 |
taccataacttgtatata--aataacactcacgaactcaccaccaagctataaattgaattagcaatattaattacatataccaaagtgaagcataggat |
8094055 |
T |
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| Q |
101 |
taattaagttaaagcttgcaaacatggggggtttaatgtatttgttggtattgtgtttgggtattattatgcaaattaatcactgccttagcaatagcat |
200 |
Q |
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| T |
8094054 |
taattaagttaaagcttgcaaacatggggggtttaatgtatctgttggtattgtgtttgggtattattatgcaaattaatcactgccttagcaatagcat |
8093955 |
T |
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| Q |
201 |
gatcatgaagtgcttgcctaagaaacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaaccattggt |
300 |
Q |
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| T |
8093954 |
gatcatgaagtgcttgcctaagaaacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaaccattggt |
8093855 |
T |
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| Q |
301 |
aaccaggcaaattatcctccctatggacaaactttctttaggtaccct |
348 |
Q |
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| T |
8093854 |
aaccaggcaaattatcctccctatggacaaactttctttaggtaccct |
8093807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 11770021 - 11770090
Alignment:
| Q |
224 |
aacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
293 |
Q |
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| T |
11770021 |
aacatgttgcattatttatatttggagattcattatttgatgttggaaacaataactatatcaatacaac |
11770090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 11777404 - 11777473
Alignment:
| Q |
224 |
aacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
293 |
Q |
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| T |
11777404 |
aacatgctgcattatttgtatttggagattcattgtttgatgttggaaacaataattatatcaatacaac |
11777473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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