View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3525_low_5 (Length: 240)
Name: NF3525_low_5
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3525_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 35490582 - 35490799
Alignment:
| Q |
8 |
tccaattgtacacatcattgagaatccaatgttaagcgcacctctcatctttgtcggagccatttcagacaaatacactggaacagactatttaggagca |
107 |
Q |
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| T |
35490582 |
tccaattgtacacatcattgagaatccaatgttaagcgcacctctcatctttgtcggagccatttcagacaaatacactggaacagactatttaggagca |
35490681 |
T |
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| Q |
108 |
acaaacaaaatcaaattcaatcagtcttgaaatattctcaaccttttatacatcaaaacatgaaagaaaaagaatgatatcaatttatacctgattacaa |
207 |
Q |
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| T |
35490682 |
acaaacaaaatcaaattcaatcagtcttgaaatattctcaaccttttatacatcaaaacatgaaagaaaaagaatgatatcaatttatacctgattacaa |
35490781 |
T |
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| Q |
208 |
tatcctacaccaaaacca |
225 |
Q |
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| T |
35490782 |
tatcctacaccaaaacca |
35490799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14232352 - 14232279
Alignment:
| Q |
9 |
ccaattgtacacatcattgagaatccaatgttaagcgcacctctcatctttgtcggagccatttcagacaaata |
82 |
Q |
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| T |
14232352 |
ccaattgtaatcatcatttggaagccaatgttaagtgctcctctaatttttgctggagccatttcagacaaata |
14232279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14242026 - 14241953
Alignment:
| Q |
9 |
ccaattgtacacatcattgagaatccaatgttaagcgcacctctcatctttgtcggagccatttcagacaaata |
82 |
Q |
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| T |
14242026 |
ccaattgtaatcatcatttggaagccaatgttaagtgctcctctaatttttgctggagccatttcagacaaata |
14241953 |
T |
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