View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3525_low_7 (Length: 214)
Name: NF3525_low_7
Description: NF3525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3525_low_7 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 30099019 - 30098816
Alignment:
| Q |
11 |
cagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaaccacnnnnnnnntagtt |
110 |
Q |
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| T |
30099019 |
cagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaacaacaaaaaaaatagtt |
30098920 |
T |
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| Q |
111 |
acctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcgcacctttg |
210 |
Q |
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| T |
30098919 |
acctgcaacagttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttg |
30098820 |
T |
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| Q |
211 |
ttga |
214 |
Q |
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|||| |
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| T |
30098819 |
ttga |
30098816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 30091942 - 30092050
Alignment:
| Q |
106 |
tagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcgcac |
205 |
Q |
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| T |
30091942 |
tagttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacac |
30092041 |
T |
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| Q |
206 |
ctttgttga |
214 |
Q |
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| T |
30092042 |
ctttgttga |
30092050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 30087982 - 30088061
Alignment:
| Q |
107 |
agttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacattt |
186 |
Q |
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| T |
30087982 |
agttacctgcaacagttgatgatgtatgagttccatgtccgatactgtctctagctgagttcttgctgattccaacattt |
30088061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 35171586 - 35171679
Alignment:
| Q |
121 |
gttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcgcacctttgttga |
214 |
Q |
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| T |
35171586 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttga |
35171679 |
T |
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