View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_high_17 (Length: 388)
Name: NF3526_high_17
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 49 - 370
Target Start/End: Complemental strand, 28284119 - 28283819
Alignment:
| Q |
49 |
ccctcacttttccaaaaacacatatgcccctt-ctagtcaaatttccacgagtaggaagacaaccaaaaataagttggcatgaaaatatttggacctttt |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28284119 |
ccctcacttttccaaaaacacat--gcccctttctagtcaaatttccacgagtaggaagacaaccaaaaataatttggcatgaaaatatttggacctttt |
28284022 |
T |
|
| Q |
148 |
-gttggatgaaatcgatgaatttttctataacttgtaaaaagaatttaaaaaatatagtttctaagtacttgatgaaattcatgaattaagtgtactaat |
246 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || |
|
|
| T |
28284021 |
tgttggatgaaatagatgaatttttctataacttgtaaaaagaatttaataaatttagtttctaagtacttgatgaa---------------------at |
28283943 |
T |
|
| Q |
247 |
tattgaatatattatgtaagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaattatgaaaatcaaaa |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283942 |
tattgaatatattatgttagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaattatgaaaatcaaaa |
28283843 |
T |
|
| Q |
347 |
ccgataaggaattgacgtcgctat |
370 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
28283842 |
ccgataaggaattgacgtcactat |
28283819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 27349025 - 27349137
Alignment:
| Q |
233 |
ttaagtgtactaattattgaatatattatgtaagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaat |
332 |
Q |
| |
|
|||||||||||| ||| | |||||||| | | || ||||||| |||| || |||||| |||||| ||||||||| ||| ||| ||||||||||||| |
|
|
| T |
27349025 |
ttaagtgtactatttaattaatatattgtccgattgattaatccgttttaattataggaagttgttgggcatttgcggtaactgcaacggtagaaggaat |
27349124 |
T |
|
| Q |
333 |
tatgaaaatcaaa |
345 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27349125 |
tatgaaaatcaaa |
27349137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University