View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_high_22 (Length: 341)

Name: NF3526_high_22
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_high_22
NF3526_high_22
[»] scaffold0136 (1 HSPs)
scaffold0136 (15-334)||(14036-14362)
[»] chr3 (8 HSPs)
chr3 (190-328)||(27853170-27853308)
chr3 (167-333)||(20886550-20886716)
chr3 (188-333)||(28326383-28326528)
chr3 (222-333)||(22470655-22470766)
chr3 (221-333)||(23054826-23054938)
chr3 (222-333)||(820095-820206)
chr3 (238-321)||(18466959-18467042)
chr3 (231-333)||(6075716-6075818)
[»] chr8 (12 HSPs)
chr8 (184-331)||(15058755-15058901)
chr8 (222-333)||(30487582-30487693)
chr8 (222-333)||(24381576-24381687)
chr8 (226-328)||(24518842-24518944)
chr8 (222-333)||(30117908-30118017)
chr8 (254-321)||(14271609-14271676)
chr8 (233-334)||(5856527-5856628)
chr8 (254-331)||(2638487-2638564)
chr8 (234-326)||(20268137-20268229)
chr8 (234-326)||(21054766-21054858)
chr8 (231-333)||(24380603-24380705)
chr8 (216-261)||(18836535-18836580)
[»] chr1 (14 HSPs)
chr1 (222-326)||(20033375-20033479)
chr1 (218-273)||(26581305-26581360)
chr1 (254-328)||(17543370-17543444)
chr1 (223-276)||(7221383-7221436)
chr1 (238-319)||(44796869-44796950)
chr1 (233-333)||(12011434-12011534)
chr1 (221-317)||(27116484-27116580)
chr1 (233-328)||(16786349-16786444)
chr1 (254-333)||(24282769-24282848)
chr1 (222-296)||(26652314-26652388)
chr1 (258-331)||(16113303-16113376)
chr1 (220-329)||(26647610-26647719)
chr1 (222-318)||(14235549-14235645)
chr1 (254-318)||(35133652-35133716)
[»] chr7 (15 HSPs)
chr7 (222-333)||(5485362-5485472)
chr7 (222-333)||(15171013-15171124)
chr7 (222-286)||(2455078-2455142)
chr7 (280-333)||(10585436-10585489)
chr7 (222-333)||(10418292-10418403)
chr7 (220-271)||(11781599-11781650)
chr7 (222-272)||(4900631-4900681)
chr7 (222-268)||(8038751-8038797)
chr7 (196-272)||(1810614-1810690)
chr7 (254-333)||(3736106-3736185)
chr7 (214-333)||(9501740-9501859)
chr7 (229-276)||(24194163-24194210)
chr7 (222-299)||(15611322-15611399)
chr7 (218-326)||(24751454-24751563)
chr7 (222-326)||(13281985-13282088)
[»] chr4 (13 HSPs)
chr4 (222-333)||(16669971-16670082)
chr4 (226-328)||(22527687-22527787)
chr4 (220-333)||(25024841-25024953)
chr4 (222-333)||(9849957-9850069)
chr4 (226-326)||(19547308-19547408)
chr4 (229-307)||(10107991-10108068)
chr4 (222-272)||(12836318-12836368)
chr4 (222-333)||(23083437-23083548)
chr4 (258-333)||(26114451-26114526)
chr4 (250-326)||(7613499-7613575)
chr4 (228-272)||(15047515-15047559)
chr4 (228-272)||(15106865-15106909)
chr4 (222-266)||(18447756-18447800)
[»] chr2 (22 HSPs)
chr2 (212-326)||(32438937-32439051)
chr2 (222-333)||(17891466-17891577)
chr2 (222-266)||(18971037-18971081)
chr2 (222-333)||(27420808-27420919)
chr2 (222-296)||(16157361-16157435)
chr2 (214-307)||(45572643-45572735)
chr2 (214-307)||(45576310-45576402)
chr2 (214-307)||(45579977-45580069)
chr2 (214-307)||(45583644-45583736)
chr2 (214-307)||(45587311-45587403)
chr2 (214-307)||(45590978-45591070)
chr2 (214-307)||(45594645-45594737)
chr2 (214-307)||(45598312-45598404)
chr2 (214-307)||(45601979-45602071)
chr2 (214-307)||(45605646-45605738)
chr2 (214-307)||(45609313-45609405)
chr2 (214-307)||(45612980-45613072)
chr2 (214-307)||(45616647-45616739)
chr2 (218-326)||(34369059-34369167)
chr2 (254-333)||(11464565-11464644)
chr2 (220-306)||(25938284-25938369)
chr2 (221-266)||(8501826-8501871)
[»] scaffold0094 (1 HSPs)
scaffold0094 (236-307)||(6199-6270)
[»] chr6 (14 HSPs)
chr6 (222-333)||(9898118-9898229)
chr6 (222-321)||(32759705-32759804)
chr6 (222-328)||(3357878-3357984)
chr6 (222-326)||(10821973-10822077)
chr6 (220-296)||(34479859-34479935)
chr6 (229-272)||(10504924-10504967)
chr6 (222-321)||(23591381-23591480)
chr6 (222-333)||(30355999-30356110)
chr6 (280-333)||(6629224-6629277)
chr6 (232-328)||(13216561-13216657)
chr6 (238-334)||(21060652-21060748)
chr6 (238-334)||(21079969-21080065)
chr6 (222-321)||(21547029-21547130)
chr6 (217-333)||(23644568-23644684)
[»] chr5 (10 HSPs)
chr5 (222-326)||(28254637-28254741)
chr5 (255-333)||(24265529-24265607)
chr5 (255-333)||(24342160-24342238)
chr5 (222-327)||(23266562-23266667)
chr5 (222-333)||(24188624-24188735)
chr5 (222-276)||(13693336-13693390)
chr5 (231-333)||(19761830-19761932)
chr5 (222-326)||(107915-108019)
chr5 (222-261)||(17831429-17831468)
chr5 (222-328)||(26253206-26253312)
[»] scaffold0086 (1 HSPs)
scaffold0086 (222-296)||(13080-13154)
[»] scaffold0019 (1 HSPs)
scaffold0019 (188-290)||(27848-27950)
[»] scaffold0360 (1 HSPs)
scaffold0360 (233-331)||(16718-16816)
[»] scaffold0451 (1 HSPs)
scaffold0451 (254-333)||(10342-10421)
[»] scaffold0386 (1 HSPs)
scaffold0386 (254-333)||(5085-5164)
[»] scaffold0043 (1 HSPs)
scaffold0043 (222-329)||(88690-88797)


Alignment Details
Target: scaffold0136 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 14362 - 14036
Alignment:
Q  15 aaaacacacaaaacaacgccttggcccgtaaggaacaggcgcca-------agaaccatgtgacaggcgcctcgaacaatgcgacaggtgcatttgtgtg 107  Q
    |||||||||||| || ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||| |     
T  14362 aaaacacacaaagcagcgccttggcccgtaaggaacaggcgccaggcgtcaagaaccatgtgacaggcgcctcgaacaatgcgacaggcgcatttgtttt 14263  T
Q  108 tttttgtttgtgccaggcgtctagattcatgcgccaagcgcctcaacatgaacctagatgcacagaaacgtgtgcgaagcgcatgtgagtgttgtttggg 207  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  14262 tttttttttgtgccaggcgtctaggttcatgcgccaagcgcctcaacatgaacctagatgcacataaacgtgtgccaagcgcatgtgagtgttgtttggg 14163  T
Q  208 ccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  14162 cctcgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtcttggaacttgagaagagaattaatccctttgtaacgtattttgag 14063  T
Q  308 accttttgaatcttgattcttcatctc 334  Q
     ||| ||||||||||||||||||||||    
T  14062 gcctcttgaatcttgattcttcatctc 14036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 190 - 328
Target Start/End: Complemental strand, 27853308 - 27853170
Alignment:
Q  190 atgtgagtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccc 289  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | | ||| | ||    
T  27853308 atgtgagtgttgcatgggccccgaaacgcctatttcttcgtctttttgggtgtttgcttccatataagatgtcttggaacttgagaacatatttcctacc 27853209  T
Q  290 tttgtaacgtattctgagaccttttgaatcttgattctt 328  Q
    | |||||||||||||||| ||| ||||||||| ||||||    
T  27853208 tctgtaacgtattctgaggcctcttgaatcttcattctt 27853170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 333
Target Start/End: Original strand, 20886550 - 20886716
Alignment:
Q  167 gcacagaaacgtgtgcgaagcgcatgtgagtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattgg 266  Q
    ||||| |||||||||  | | ||||||||||||||| ||||| | | |||| ||||||||| |||||||| ||||||||||| |||||||||||| ||||    
T  20886550 gcacaaaaacgtgtgtcaggtgcatgtgagtgttgtctgggctctggaacgactatttctttgtctttttaggtgtttgcttccatataagatgtcttgg 20886649  T
Q  267 aacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||||| ||| | |||| |||||||||||| || || |||| ||| ||| ||||| |||||||||||    
T  20886650 aacttgggaataaaattaatccctttgtaatgtcttatgaggcctcttggatcttcattcttcatct 20886716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 333
Target Start/End: Complemental strand, 28326528 - 28326383
Alignment:
Q  188 gcatgtgagtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatc 287  Q
    |||||||| || ||| || |||||| |||  |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| | ||||| ||    
T  28326528 gcatgtgaatgctgtctgtgccccggaacatctatttcttcgtctttttgggtgtttgcttccatataagatgtcttggaacttgggaataaaattcctc 28326429  T
Q  288 cctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
     || ||||| |  || |||| | | |||||| || |||||||||||    
T  28326428 tctctgtaaagccttatgaggcatcttgaatattcattcttcatct 28326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 22470766 - 22470655
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||||| |||||||||||   | |||||||| || ||||||| ||| | ||||| ||||||||| | || ||||||| ||| |||||||||    
T  22470766 tttcttcgcctttttaggtgtttgcttctttgtaagatgtcttcgaacttgggaacaaaattcctccctttgtgaagtcttctgaggcctattgaatctt 22470667  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  22470666 cattcttcatct 22470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 23054938 - 23054826
Alignment:
Q  221 atttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatct 320  Q
    ||||||||||||| |  ||||||||||| |||||||||||| |||| ||||  ||| | ||||| |||||||||||  | || |||| ||| ||||||||    
T  23054938 atttcttcgtcttctatggtgtttgcttccatataagatgtcttgggacttaggaacataattcctccctttgtaatttcttttgaggcctcttgaatct 23054839  T
Q  321 tgattcttcatct 333  Q
    | |||||| ||||    
T  23054838 tcattcttgatct 23054826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 820206 - 820095
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||| |||| ||||||||||||   | ||||||||  ||||||||  ||| | ||||| ||||| |||||||| || |||| ||| |||||||||    
T  820206 tttcttcgtgttttcgggtgtttgcttctctgtaagatgtcatggaactttggaacaaaattcctccctctgtaacgtcttttgaggcctcttgaatctt 820107  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  820106 aattcttcatct 820095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 18467042 - 18466959
Alignment:
Q  238 ggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||||| |||||||||||| |||| ||||| ||| | ||||  ||||||| ||| || ||||||| ||| |||||||||    
T  18467042 ggtgtttgcttccatataagatgttttggtacttgggaacaaaattactccctttttaaagtcttctgagtcctcttgaatctt 18466959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 6075716 - 6075818
Alignment:
Q  231 ctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttca 330  Q
    ||||| || |||||||||  || ||||||||  ||||||| ||||| ||||||| ||||||| ||| |  | ||||| ||| ||||||||| ||||||||    
T  6075716 cttttcggatgtttgcttctatgtaagatgtcctggaactcgagaatagaattcctccctttataatgcctcctgaggcctcttgaatcttcattcttca 6075815  T
Q  331 tct 333  Q
    |||    
T  6075816 tct 6075818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 15058901 - 15058755
Alignment:
Q  184 aagcgcatgtgagtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaatt 283  Q
    ||||| ||||||||| | ||||| |||   || |||||||||||||||||||||| ||||||||| |||||||||||   ||||||||| ||| | ||||    
T  15058901 aagcgtatgtgagtgctctttggtcccaagaatgcctatttcttcgtctttttggatgtttgcttccatataagatg-cctggaacttgggaacaaaatt 15058803  T
Q  284 catccctttgtaacgtattctgagaccttttgaatcttgattcttcat 331  Q
      ||| |||||||||| ||||||||||| ||||||||| |||||||||    
T  15058802 tctccatttgtaacgtcttctgagacctcttgaatcttcattcttcat 15058755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 30487582 - 30487693
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||| | ||||||||||||||||||   |||||||||| |||||||||| ||| ||||||||||||| || ||| | || |||| ||| |||||||||    
T  30487582 tttctttgcctttttgggtgtttgcttatctataagatgtcttggaacttgggaatagaattcatccctctgcaacatcttttgaggcctcttgaatctt 30487681  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  30487682 cattcttcatct 30487693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 24381687 - 24381576
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||| |||||||||||||||| |||  || |||||||| |||||||||| ||| | ||||| | ||||||||| || |||||||  || |||||||||    
T  24381687 tttctttgtctttttgggtgttttcttatatgtaagatgtcttggaacttgggaacaaaattccttcctttgtaatgtcttctgaggactcttgaatctt 24381588  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  24381587 cattcttcatct 24381576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 24518944 - 24518842
Alignment:
Q  226 ttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgatt 325  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| |||   ||||| || || ||||| || ||||||| ||| || |||||| |||    
T  24518944 ttcgtctttttgggtgtttgcttccatataagatgtcttggaacttgggaactaaattcctctctctgtaatgtcttctgaggcctcttaaatcttcatt 24518845  T
Q  326 ctt 328  Q
    |||    
T  24518844 ctt 24518842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 30118017 - 30117908
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||| | |||||| |||||||||||  || |||||||| |||||||||||||| |||||   |||||||| || || || |||| ||| |||||||||    
T  30118017 tttctttgcctttttaggtgtttgcttcaatgtaagatgtcttggaacttgagaacagaat--ctccctttgcaaagtcttttgaggcctcttgaatctt 30117920  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  30117919 cattcttcatct 30117908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 14271609 - 14271676
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||||||||||||| | ||||| ||||| |||||||| ||||||| ||| |||||||||    
T  14271609 taagatgtcttggaacttgagaacataattcctccctatgtaacgtcttctgaggcctattgaatctt 14271676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 5856527 - 5856628
Alignment:
Q  233 ttttgggtgtttgctttcatataagatgtattggaacttgagaa-gagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcat 331  Q
    ||||||||||||||||| || |||||||  |||||||||| |||  ||||||| ||||| |||||| | ||| ||| ||| ||||||||| |||||||||    
T  5856527 ttttgggtgtttgcttttatgtaagatgacttggaacttgggaacaagaattc-tccctctgtaacatgttccgaggcctcttgaatcttcattcttcat 5856625  T
Q  332 ctc 334  Q
    |||    
T  5856626 ctc 5856628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 2638487 - 2638564
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcat 331  Q
    ||||||||||||||||||||||| |||||| |||| |||||||  | || |||| ||| ||||||||| | |||||||    
T  2638487 taagatgtattggaacttgagaacagaatttatccatttgtaaattcttttgaggcctcttgaatcttcactcttcat 2638564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 20268137 - 20268229
Alignment:
Q  234 tttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattc 326  Q
    |||||||||||  || ||||||||||||||||| |||| |||| | ||||| ||||||||||| || || || ||||| || |||||| ||||    
T  20268137 tttgggtgttttattccatataagatgtattgggacttaagaacaaaattcctccctttgtaatgtcttttgtgacctcttaaatcttcattc 20268229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 21054766 - 21054858
Alignment:
Q  234 tttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattc 326  Q
    |||||||||||  || ||||||||||||||||| |||| |||| | ||||| ||||||||||| || || || ||||| || |||||| ||||    
T  21054766 tttgggtgttttattccatataagatgtattgggacttaagaacaaaattcctccctttgtaatgtcttttgtgacctcttaaatcttcattc 21054858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 24380705 - 24380603
Alignment:
Q  231 ctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttca 330  Q
    |||||| |||||||||||  || |||||||| || ||||||| ||| | ||||| |  |||||| | || ||||||| ||| ||||||||| ||||||||    
T  24380705 ctttttaggtgtttgcttctatgtaagatgtctttgaacttgggaacataattccttgctttgtgaagtcttctgaggcctcttgaatcttcattcttca 24380606  T
Q  331 tct 333  Q
    |||    
T  24380605 tct 24380603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 18836535 - 18836580
Alignment:
Q  216 cgcctatttcttcgtctttttgggtgtttgctttcatataagatgt 261  Q
    ||||| ||||||| || |||||||||||||||| ||||||||||||    
T  18836535 cgcctgtttcttcatccttttgggtgtttgcttccatataagatgt 18836580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 20033479 - 20033375
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| | ||||  |||||||| || || ||||||| ||| |||||||||    
T  20033479 tttcttcgtctttttgggtgtttgctttaatataagatgtcttgggacttgagaacataatttctccctttgaaatgtcttctgaggcctcttgaatctt 20033380  T
Q  322 gattc 326  Q
     ||||    
T  20033379 cattc 20033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 26581305 - 26581360
Alignment:
Q  218 cctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttga 273  Q
    |||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  26581305 cctatttctttgtctttttgtgtgtttgcttccatataagatgtattgggacttga 26581360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 17543444 - 17543370
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattctt 328  Q
    |||||||| |||||||||| ||| | ||||||||||| ||||||||  |||||||||| ||||||||| ||||||    
T  17543444 taagatgtcttggaacttgggaacaaaattcatccctctgtaacgtcgtctgagacctattgaatcttcattctt 17543370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 7221383 - 7221436
Alignment:
Q  223 ttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaa 276  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||    
T  7221383 ttcttcgtccttttgggtgtttgttttcatataagatgtcttgggacttgagaa 7221436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 44796869 - 44796950
Alignment:
Q  238 ggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatc 319  Q
    ||||||| |||  ||||||||||| |||||||||| ||| | ||||| ||||| |||||||| ||||||| ||| |||||||    
T  44796869 ggtgttttcttcaatataagatgtcttggaacttgggaacataattcctccctctgtaacgtcttctgaggcctcttgaatc 44796950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 12011534 - 12011434
Alignment:
Q  233 ttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatc 332  Q
    |||||||||||||||| |||||||| ||| |||| || |||||| | ||||| | ||| ||||| || || |||| ||| ||||||||| |||||| |||    
T  12011534 ttttgggtgtttgcttccatataagttgtcttgggacctgagaacaaaattccttcctctgtaaagtcttttgaggcctattgaatcttcattcttgatc 12011435  T
Q  333 t 333  Q
    |    
T  12011434 t 12011434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 27116580 - 27116484
Alignment:
Q  221 atttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaa 317  Q
    |||| |||||| ||||||||||||||||||||||||| ||| |||| || || | | | |||||||| |||||||| || ||| ||| ||| |||||    
T  27116580 attttttcgtcgttttgggtgtttgctttcatataagttgtcttgggacctgggtacaaaattcatctctttgtaaagtcttccgaggcctcttgaa 27116484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 16786444 - 16786349
Alignment:
Q  233 ttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattctt 328  Q
    |||||||||||||||| ||||||||||||||||| || ||  || | ||||  ||||| ||||| || || ||||  |||||||||||| ||||||    
T  16786444 ttttgggtgtttgcttccatataagatgtattgggacctggaaacataatttctccctctgtaaagtcttatgaggtcttttgaatcttcattctt 16786349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 24282769 - 24282848
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||||||||||| |||||| ||| | ||||| ||||||||||| || || |||| ||| |||||| || |||||||||||    
T  24282769 taagatgtattgtaacttgggaacataattcctccctttgtaaagtcttatgaggcctcttgaatattcattcttcatct 24282848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 26652314 - 26652388
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaa 296  Q
    |||||||||||| |||||| ||| ||| ||||| |||||| |||| ||||||||| | | ||||||||| |||||    
T  26652314 tttcttcgtcttcttgggtatttacttccatatgagatgtcttgggacttgagaacaaatttcatccctatgtaa 26652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 16113303 - 16113376
Alignment:
Q  258 atgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcat 331  Q
    ||||| ||||||||||||| | ||||| |||||||||||  | ||||||| ||| |||||| || |||||||||    
T  16113303 atgtactggaacttgagaacaaaattcctccctttgtaaattcttctgaggcctattgaatattcattcttcat 16113376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 26647719 - 26647610
Alignment:
Q  220 tatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatc 319  Q
    |||||||||| |  ||| || |||| |||| || |||||||| ||||||| || ||| | ||||| ||||| |||||||| || |||| ||| |||||||    
T  26647719 tatttcttcgccccttttggcgttttctttaatgtaagatgtgttggaacatgggaacaaaattcctccctctgtaacgtcttatgaggcctcttgaatc 26647620  T
Q  320 ttgattcttc 329  Q
    |||| |||||    
T  26647619 ttgaatcttc 26647610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 14235645 - 14235549
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaat 318  Q
    ||||||| || |||||||||||||||| |||||||||||| |||  |||||  || | ||||| ||||| ||||| || | ||||||| | ||||||    
T  14235645 tttcttcatccttttgggtgtttgcttccatataagatgtcttgagacttggcaacataattcctccctctgtaatgtctcctgagacgtcttgaat 14235549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 35133652 - 35133716
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaat 318  Q
    |||||||| |||||||||| ||| | |||||  ||||||||||||| ||||||| ||| ||||||    
T  35133652 taagatgtcttggaacttgggaacataattctaccctttgtaacgtcttctgaggcctcttgaat 35133716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 5485362 - 5485472
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||||| |||||||||||| ||| |||||||| |||||||||| ||| | ||||| ||||| |||||||| || ||||||| ||| ||||||    
T  5485362 tttcttcgtctttt-gggtgtttgcttccatgtaagatgtcttggaacttgggaataaaattcttccctctgtaacgtcttttgagaccatttaaatctt 5485460  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  5485461 cattcttcatct 5485472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 15171124 - 15171013
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||||| ||||||||| |  || |||||||| |||||||||  ||| | ||||| ||||||||||| || ||||||| ||| |||||||||    
T  15171124 tttcttcgcctttttaggtgtttgcctctatgtaagatgtcttggaacttaggaacaaaattcctccctttgtaaagtcttctgaggcctcttgaatctt 15171025  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  15171024 cattcttcatct 15171013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 2455078 - 2455142
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcat 286  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||| | |||||||    
T  2455078 tttcttcgtctttttgggtgtttactttcatataagttgtcttgggacttgagaacataattcat 2455142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 10585489 - 10585436
Alignment:
Q  280 aattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||||||    
T  10585489 aattcctccctttgtaaagtcttctgagaccttttgaatcttcattcttcatct 10585436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 10418292 - 10418403
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||||||  ||||||||||   | |||||||| |||||||||| ||| | ||||  ||| ||||||| || |||||||  || |||||||||    
T  10418292 tttcttcgtctttttaagtgtttgcttcagtgtaagatgtcttggaacttgggaacataatttctccttttgtaaagtcttctgaggtctcttgaatctt 10418391  T
Q  322 gattcttcatct 333  Q
    || |||||||||    
T  10418392 gaatcttcatct 10418403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 11781599 - 11781650
Alignment:
Q  220 tatttcttcgtctttttgggtgtttgctttcatataagatgtattggaactt 271  Q
    |||||||||||||||||||||||||| ||  ||||||||||| |||||||||    
T  11781599 tatttcttcgtctttttgggtgtttgtttctatataagatgtcttggaactt 11781650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 4900681 - 4900631
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    ||||||||||||||||||||||||||| | |||| |||||||||| |||||    
T  4900681 tttcttcgtctttttgggtgtttgcttccgtatacgatgtattgggacttg 4900631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 8038751 - 8038797
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaa 268  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  8038751 tttcttcgtctttttgagtgttagctttcatataagatgtcttggaa 8038797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 1810614 - 1810690
Alignment:
Q  196 gtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    ||||||||| ||||| | |||  | ||||||| |||||||||||||||| ||| || ||||||||| ||||||||||    
T  1810614 gtgttgttttggccctggaacttcgatttctttgtctttttgggtgttttcttccacataagatgtcttggaacttg 1810690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 3736106 - 3736185
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||||||| |||||| ||||||| ||||||| ||||| ||||  || | ||||| ||| ||||||||| |||||||||||    
T  3736106 taagatgtcttggaaattgagaacagaattcctccctctgtatagtctcctgaggcctcttgaatcttcattcttcatct 3736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 9501740 - 9501859
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttt 313  Q
    |||| |||||| |||  |||||| |||||||||||  || |||||||| |||| |||||  || | ||||| ||||| |||||| |||| |||| ||| |    
T  9501740 aacgtctatttattcacctttttaggtgtttgcttctatgtaagatgtcttggcacttggaaacataattcctccctctgtaacatattttgaggcctct 9501839  T
Q  314 tgaatcttgattcttcatct 333  Q
    |||||||| |||||| ||||    
T  9501840 tgaatcttcattctttatct 9501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 24194163 - 24194210
Alignment:
Q  229 gtctttttgggtgtttgctttcatataagatgtattggaacttgagaa 276  Q
    ||||| ||||||||||||||||| ||||||||| |||| |||||||||    
T  24194163 gtcttattgggtgtttgctttcacataagatgtcttgggacttgagaa 24194210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 15611399 - 15611322
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgt 299  Q
    |||||||  ||||||||||||||||||  ||||||||||| |||||| ||| ||| | ||||  ||||| ||||||||    
T  15611399 tttcttcacctttttgggtgtttgcttctatataagatgtcttggaatttgggaacataatttctccctctgtaacgt 15611322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 24751563 - 24751454
Alignment:
Q  218 cctatttcttcgtctttttgggtgtttgctttc-atataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttga 316  Q
    ||||||||||| || ||||||||||||  |||| | || |||||| |||||| ||| ||| | ||||  ||||||||||| || ||||||| ||| ||||    
T  24751563 cctatttcttcatccttttgggtgttttttttccacattagatgttttggaaattgggaacaaaatttctccctttgtaatgtcttctgaggcctcttga 24751464  T
Q  317 atcttgattc 326  Q
    ||||| ||||    
T  24751463 atcttcattc 24751454  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 13282088 - 13281985
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||| | |||||||| ||| || ||||||||| |||| ||||| ||| | ||||| |||||||||||  | || |||| ||| |||||||||    
T  13282088 tttcttcgtcttat-gggtgtttccttccagataagatgtcttgggacttgggaacaaaattcctccctttgtaatatcttttgaggcctcttgaatctt 13281990  T
Q  322 gattc 326  Q
     ||||    
T  13281989 cattc 13281985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 16670082 - 16669971
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||  |||| ||||||||||||  || ||||||||  ||||||||| ||| | ||||| |||||||||||||| ||||||| |||||||||||||    
T  16670082 tttcttcgctttttcgggtgtttgcttctatgtaagatgtcatggaacttgggaacaaaattcctccctttgtaacgtcttctgaggccttttgaatctt 16669983  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  16669982 aattcttcatct 16669971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 22527687 - 22527787
Alignment:
Q  226 ttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgatt 325  Q
    ||||||||||||||| ||||||| |||||| ||||| ||| ||| |||| | |  |||| ||||||||||||||||| |||| ||| ||||||||| |||    
T  22527687 ttcgtctttttgggtatttgcttccatatacgatgtcttgaaacatgagcaaa--attcttccctttgtaacgtattttgaggcctcttgaatcttcatt 22527784  T
Q  326 ctt 328  Q
    |||    
T  22527785 ctt 22527787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 25024841 - 25024953
Alignment:
Q  220 tatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatc 319  Q
    |||||||||||||||| || |||||||||  ||||||| ||| |||||||||  ||| | | ||| ||||||||||| || || |||| ||| |||||||    
T  25024841 tatttcttcgtcttttagg-tgtttgcttctatataagttgtcttggaacttcggaacatatttcttccctttgtaaagtcttttgaggcctcttgaatc 25024939  T
Q  320 ttgattcttcatct 333  Q
    || |||||||||||    
T  25024940 ttcattcttcatct 25024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 9850069 - 9849957
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaactt-gagaagagaattcatccctttgtaacgtattctgagaccttttgaatct 320  Q
    |||||| |||||||| |||||||| ||  || |||| ||| ||||||||| | ||| ||||||| ||||||||||| || ||||||||||| |||||| |    
T  9850069 tttctttgtctttttaggtgtttgtttctatgtaagttgtcttggaactttgggaacagaattcctccctttgtaaagtcttctgagacctcttgaattt 9849970  T
Q  321 tgattcttcatct 333  Q
    | |||||| ||||    
T  9849969 tcattctttatct 9849957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 19547408 - 19547308
Alignment:
Q  226 ttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgatt 325  Q
    ||||||||||||| ||||||||| || ||||||||| ||| |||||||||| | ||||  ||||||||||| || ||| ||  ||| ||||||||| |||    
T  19547408 ttcgtctttttggatgtttgcttccacataagatgtcttgaaacttgagaacataatttctccctttgtaatgtcttccgacgcctcttgaatcttcatt 19547309  T
Q  326 c 326  Q
    |    
T  19547308 c 19547308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 10107991 - 10108068
Alignment:
Q  229 gtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||| |||||||||||| |||| ||||| ||| | ||||| ||||||||||| || |||||||    
T  10107991 gtctttttgggtgttt-cttccatataagatgtcttgggacttgggaaaataattcctccctttgtaatgttttctgag 10108068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 12836368 - 12836318
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    |||||||||||||||||||||||||||  ||||||||||| | ||||||||    
T  12836368 tttcttcgtctttttgggtgtttgcttctatataagatgtctaggaacttg 12836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 23083437 - 23083548
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||| | |||||||| |||||| ||| || |||||||| ||||||||||  || | ||||   |||| |||||||| ||| ||| ||| |||||||||    
T  23083437 tttctttgcctttttggatgtttgtttttatgtaagatgtcttggaacttggaaacaaaatttcaccctctgtaacgtcttccgaggcctcttgaatctt 23083536  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  23083537 cattcttcatct 23083548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 26114526 - 26114451
Alignment:
Q  258 atgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||| |||||||||| ||| | ||||||||| ||||||| || || |||| ||| ||||||||| |||||||||||    
T  26114526 atgtcttggaacttgggaacaaaattcatccatttgtaaagtcttttgaggcctcttgaatcttcattcttcatct 26114451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 7613499 - 7613575
Alignment:
Q  250 catataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattc 326  Q
    |||||||||||| |||| ||||||||| | ||||| ||| ||||||| || ||||||| | | ||||||||| ||||    
T  7613499 catataagatgttttgggacttgagaataaaattcttccatttgtaatgtcttctgaggcgtcttgaatctttattc 7613575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 15047515 - 15047559
Alignment:
Q  228 cgtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    |||| |||||||||||||||| |||||||||||| |||| |||||    
T  15047515 cgtccttttgggtgtttgcttccatataagatgtcttgggacttg 15047559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 15106909 - 15106865
Alignment:
Q  228 cgtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    |||| |||||||||||||||| |||||||||||| |||| |||||    
T  15106909 cgtccttttgggtgtttgcttccatataagatgtcttgggacttg 15106865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 18447800 - 18447756
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattgg 266  Q
    |||||||||||| ||||||||| |||| |||||||||||| ||||    
T  18447800 tttcttcgtcttgttgggtgttagcttccatataagatgtcttgg 18447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 32439051 - 32438937
Alignment:
Q  212 gtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagacct 311  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||| || | ||||| ||| ||||||| ||||||||||| || || |||| |||    
T  32439051 gtaacgcctgtttcttcgtcttttttggtgtttgctttagtataagatgtcttaggacttgtgaacagaattcctccctttgtaatgttttttgaggcct 32438952  T
Q  312 tttgaatcttgattc 326  Q
     ||||||||| ||||    
T  32438951 cttgaatcttcattc 32438937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 17891466 - 17891577
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||||| |||||||||||  || |||| ||| |||||||||||||| | ||||| ||| |||||||  | || |||| ||| |||||||||    
T  17891466 tttcttcgcctttttaggtgtttgcttctatgtaagttgtcttggaacttgagaacataattcctccttttgtaaattcttatgaggcctcttgaatctt 17891565  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  17891566 cattcttcatct 17891577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 18971081 - 18971037
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattgg 266  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  18971081 tttcttcgtctttttgggtgtttgcttccatataagatgtcttgg 18971037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 27420808 - 27420919
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| ||||||||||||||||||  || |||||||| ||||||||||  || | | ||| | || |||||| || ||||||| ||  |||||||||    
T  27420808 tttcttcgcctttttgggtgtttgcttctatgtaagatgtcttggaacttggaaacatacttccttcccttgtaatgtcttctgaggccacttgaatctt 27420907  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  27420908 cattcttcatct 27420919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 16157435 - 16157361
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaa 296  Q
    |||||||||||||||||| |||||||| |||  |||||||||||| ||||| | | | ||||| |||||||||||    
T  16157435 tttcttcgtctttttgggcgtttgcttccatgaaagatgtattgggacttgggcacaaaattcctccctttgtaa 16157361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45572735 - 45572643
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45572735 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45572643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45576402 - 45576310
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45576402 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45576310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45580069 - 45579977
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45580069 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45579977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45583736 - 45583644
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45583736 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45587403 - 45587311
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45587403 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45587311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45591070 - 45590978
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45591070 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45590978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45594737 - 45594645
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45594737 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45594645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45598404 - 45598312
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45598404 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45598312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45602071 - 45601979
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45602071 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45601979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45605738 - 45605646
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45605738 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45605646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45609405 - 45609313
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45609405 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45609313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45613072 - 45612980
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45613072 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45612980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 45616739 - 45616647
Alignment:
Q  214 aacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    |||||||||||||||| ||||| || | |||||||  || |||||||| |||||||||| ||| | ||||| ||||||||||| || |||||||    
T  45616739 aacgcctatttcttcgccttttagg-tatttgcttctatgtaagatgtcttggaacttgggaacaaaattcctccctttgtaaagtcttctgag 45616647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 34369059 - 34369167
Alignment:
Q  218 cctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaa 317  Q
    |||||||||||||| |||||||||||||||| || ||||||||| || | ||||| ||| | ||||| ||| ||| |||  | || |||| ||| |||||    
T  34369059 cctatttcttcgtccttttgggtgtttgcttccacataagatgtcttcggacttgggaacaaaattcctccatttttaatctcttatgaggcctcttgaa 34369158  T
Q  318 tcttgattc 326  Q
    |||| ||||    
T  34369159 tcttcattc 34369167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 11464644 - 11464565
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||| ||| |||||||||| ||| ||||||| ||||||||| | || || |||| ||| ||||||||| |||||||||||    
T  11464644 taagttgtcttggaacttgggaatagaattcctccctttgttaagtcttttgaggcctcttgaatcttcattcttcatct 11464565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 25938284 - 25938369
Alignment:
Q  220 tatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctga 306  Q
    |||||||||||||||| | |||||  |||||||||||||||| || | ||||| ||| | ||||| ||||||||||| || ||||||    
T  25938284 tatttcttcgtctttt-gtgtgttccctttcatataagatgtcttaggacttgggaacataattcctccctttgtaatgtcttctga 25938369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 8501871 - 8501826
Alignment:
Q  221 atttcttcgtctttttgggtgtttgctttcatataagatgtattgg 266  Q
    ||||| ||||| |||||||||||||||| |||||||||||| ||||    
T  8501871 atttcctcgtcattttgggtgtttgcttccatataagatgtgttgg 8501826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 6199 - 6270
Alignment:
Q  236 tgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgag 307  Q
    ||||||||||||| |||||||||||| |||||||||||||| | |||||||| ||||||||||| |||||||    
T  6199 tgggtgtttgcttccatataagatgtcttggaacttgagaacataattcatcactttgtaacgtcttctgag 6270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 9898229 - 9898118
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||| | |||||||||||  || |||||||| |||||||||||||| | ||||| | |||||||||  | ||||||| ||| |||||||||    
T  9898229 tttcttcgcctttataggtgtttgcttcaatgtaagatgtcttggaacttgagaataaaattccttcctttgtaaattcttctgaggcctcttgaatctt 9898130  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  9898129 tattcttcatct 9898118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 32759705 - 32759804
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||| || |||||||||||||| |||||||||||| |||| || || ||| | ||||| |||||||||||||| ||| ||| ||| |||||||||    
T  32759705 tttcttcgttttcttgggtgtttgcttccatataagatgtcttgggacctgggaacaaaattcctccctttgtaacgtcttccgaggcctcttgaatctt 32759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 3357878 - 3357984
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||||||| | |||||||| || |||| |||| |||||||||| ||| | ||||| ||||||||||| || || |||| || ||||||||||    
T  3357878 tttcttcgtctttttgtgcgtttgcttccacataacatgtcttggaacttgggaacaaaattcctccctttgtaatgtcttttgaggccctttgaatctt 3357977  T
Q  322 gattctt 328  Q
     ||||||    
T  3357978 cattctt 3357984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 10821973 - 10822077
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||| |||||||||| | ||||||||| |||||||||||| |||| ||||| ||| | ||||| | ||||||||| || || |||| |||||||||||||    
T  10821973 tttcatcgtctttttcgatgtttgcttccatataagatgtcttgggacttgggaacataattccttcctttgtaatgtcttttgaggccttttgaatctt 10822072  T
Q  322 gattc 326  Q
     ||||    
T  10822073 cattc 10822077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 34479859 - 34479935
Alignment:
Q  220 tatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaa 296  Q
    |||||||| |||||||||||| |||||||||||||||||||  || |||| || ||| | ||||| |||||||||||    
T  34479859 tatttctttgtctttttgggtatttgctttcatataagatgccttcgaacatgggaacataattcctccctttgtaa 34479935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 10504924 - 10504967
Alignment:
Q  229 gtctttttgggtgtttgctttcatataagatgtattggaacttg 272  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  10504924 gtctttttgggtgtttgctttcatataagatgtcttgggacttg 10504967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 23591381 - 23591480
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||  ||  |||| ||||||| |||||||   | || ||||||| ||| |||||||||    
T  23591381 tttcttcatctttttgggtgtttgcttacatataagatgtcttgggcctccagaatagaattcctccctttaatatgtcttctgaggcctcttgaatctt 23591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 30355999 - 30356110
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||||||||||||||||||||| |||||||||||  |||| || |||||| | || |  ||||| |||||  | ||||||| | | |||||||||    
T  30355999 tttcttcgtctttttgggtgtttgcttccatataagatgccttgggacatgagaatataagttctccctctgtaatatcttctgaggcttcttgaatctt 30356098  T
Q  322 gattcttcatct 333  Q
     |||||| ||||    
T  30356099 cattcttgatct 30356110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 6629277 - 6629224
Alignment:
Q  280 aattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    ||||| ||||||||||| || ||||||| ||| ||||||||| |||||||||||    
T  6629277 aattcctccctttgtaaagtcttctgaggcctcttgaatcttcattcttcatct 6629224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 13216657 - 13216561
Alignment:
Q  232 tttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattctt 328  Q
    |||||||||||||||||||||||| ||||| |||| || ||  || | ||||  ||||||||||| || || |||  ||| ||||||||| ||||||    
T  13216657 tttttgggtgtttgctttcatatacgatgttttgggacctgtcaacataatttctccctttgtaaagttttatgatgcctcttgaatcttcattctt 13216561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 21060748 - 21060652
Alignment:
Q  238 ggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatctc 334  Q
    ||||||||||| |||||||||||| ||||  |||| ||| | ||||  ||| | |||||| | ||||||| ||| ||||||||| |||||| |||||    
T  21060748 ggtgtttgcttccatataagatgtcttggcccttgggaaaataatttctccttctgtaacatcttctgaggcctcttgaatcttcattcttgatctc 21060652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 21080065 - 21079969
Alignment:
Q  238 ggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatctc 334  Q
    ||||||||||| |||||||||||| |||| ||||| ||| | ||||  ||| | |||||| | |||| || ||| ||||||||| |||||| |||||    
T  21080065 ggtgtttgcttccatataagatgtcttggcacttgggaaaataatttctccttctgtaacatcttcttaggcctcttgaatcttcattcttaatctc 21079969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 21547130 - 21547029
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtat---tggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaat 318  Q
    |||||||| |||||||||||||| ||| |||||||||||| |   ||| ||||| ||| | ||||| ||||||||||| || || |||| ||| ||||||    
T  21547130 tttcttcgactttttgggtgttt-cttccatataagatgtcttggtgggacttgcgaacaaaattcctccctttgtaatgtcttttgaggcctcttgaat 21547032  T
Q  319 ctt 321  Q
    |||    
T  21547031 ctt 21547029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 23644684 - 23644568
Alignment:
Q  217 gcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttga 316  Q
    |||| ||||||||||||||| |||||||||||  || |||| | | |||||||||| ||| ||||||| | ||||  ||| || || |||  ||| ||||    
T  23644684 gcctgtttcttcgtctttttaggtgtttgcttctatgtaagttttcttggaacttgggaacagaattcctaccttcttaaagtcttatgatgcctcttga 23644585  T
Q  317 atcttgattcttcatct 333  Q
    |||||  ||||||||||    
T  23644584 atcttccttcttcatct 23644568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 28254637 - 28254741
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||| ||||||| ||||||||||| ||| |||||||| |||||||||  ||| | ||||| ||| ||||||| || || |||| |||||||||||||    
T  28254637 tttcttcatcttttttggtgtttgcttccatgtaagatgtcttggaacttctgaacataattcctccatttgtaatgtcttatgaggccttttgaatctt 28254736  T
Q  322 gattc 326  Q
     ||||    
T  28254737 cattc 28254741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 24265607 - 24265529
Alignment:
Q  255 aagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    ||||||| |||||||||| ||| | ||||| ||||||||||| || ||||||| |||||||| |||| |||||||||||    
T  24265607 aagatgtcttggaacttgtgaacaaaattcctccctttgtaaagtcttctgaggccttttgattcttcattcttcatct 24265529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 24342238 - 24342160
Alignment:
Q  255 aagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    ||||||| |||||||||| ||| | ||||| ||||||||||| || ||||||| |||||||| |||| |||||||||||    
T  24342238 aagatgtcttggaacttgtgaacaaaattcctccctttgtaaagtcttctgaggccttttgattcttcattcttcatct 24342160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 23266562 - 23266667
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||| |||||||||||||||| ||  ||||||||||| |||||||||| ||| | ||||| |||| |||||| || |||| || | | |||||||||    
T  23266562 tttcttcatctttttgggtgtttgtttctatataagatgtcttggaacttgggaacataattcttccccttgtaaggtcttctaaggcatcttgaatctt 23266661  T
Q  322 gattct 327  Q
     |||||    
T  23266662 cattct 23266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 24188624 - 24188735
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| |||||| |||||||||||  || |||||||| || ||||||| ||| | ||||  ||| | |||||||| ||||||  ||| |||||||||    
T  24188624 tttcttcgcctttttaggtgtttgcttatatgtaagatgtgttcgaacttgggaacataatttctccatatgtaacgtcttctgaagcctcttgaatctt 24188723  T
Q  322 gattcttcatct 333  Q
     |||||||||||    
T  24188724 cattcttcatct 24188735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 13693336 - 13693390
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaa 276  Q
    |||||||||||||||||||||||| || |||||||||||| |||| || ||||||    
T  13693336 tttcttcgtctttttgggtgtttgtttccatataagatgtcttgggacatgagaa 13693390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 19761932 - 19761830
Alignment:
Q  231 ctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttca 330  Q
    ||||||||||||||||||  |  || ||||| |||||||||| ||| | ||||| ||||| |||||||| ||||||| ||| |||||| ||  |||||||    
T  19761932 ctttttgggtgtttgcttctaagtatgatgttttggaacttgggaacataattcctccctctgtaacgtcttctgaggcctcttgaatattctttcttca 19761833  T
Q  331 tct 333  Q
    |||    
T  19761832 tct 19761830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 108019 - 107915
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||||||| ||||||| ||| || ||| ||||||||  ||| ||||||||| | ||||| ||| ||||||| || ||||||  ||| |||||||||    
T  108019 tttcttcgtcttattgggtgattggttccatgtaagatgtcatgggacttgagaacataattcctccatttgtaatgttttctgatgcctcttgaatctt 107920  T
Q  322 gattc 326  Q
     ||||    
T  107919 cattc 107915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 17831429 - 17831468
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgt 261  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  17831429 tttcttcgtctttttgggtgtttgcttccatacaagatgt 17831468  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 26253206 - 26253312
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    ||||||||||||||| ||||||| ||| |||||||||||| ||  |||||| ||| |  |||| ||||| |||||  | |||||||  || |||||||||    
T  26253206 tttcttcgtctttttaggtgtttacttccatataagatgtcttataacttgggaacatcattcctccctctgtaatatcttctgagggctcttgaatctt 26253305  T
Q  322 gattctt 328  Q
     ||||||    
T  26253306 cattctt 26253312  T

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Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 13154 - 13080
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaa 296  Q
    ||||||||||||||||||||||||||| |||||||| ||| || | ||||||||| | ||||  |||||||||||    
T  13154 tttcttcgtctttttgggtgtttgcttccatataaggtgtcttaggacttgagaacataatttctccctttgtaa 13080  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 27848 - 27950
Alignment:
Q  188 gcatgtgagtgttgtttgggccccgtaacgcctatttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatc 287  Q
    |||||||||||||||  |||| | | | ||| ||||||||||||||||| ||||||| | | |||||||||||| ||| |||||| ||| ||||||| ||    
T  27848 gcatgtgagtgttgtccgggctcgggagcgcttatttcttcgtctttttaggtgtttccatccatataagatgtcttgaaacttgggaatagaattcctc 27947  T
Q  288 cct 290  Q
    |||    
T  27948 cct 27950  T

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Target: scaffold0360 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 16816 - 16718
Alignment:
Q  233 ttttgggtgtttgctttcatataagatgtattggaacttgagaa-gagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcat 331  Q
    ||||||||||||||||| || |||||||  |||||||||| |||  ||||||| ||||| |||||| | ||||||| ||| ||||||||| |||||||||    
T  16816 ttttgggtgtttgcttttatgtaagatgacttggaacttgggaacaagaattc-tccctctgtaacatgttctgaggcctcttgaatcttcattcttcat 16718  T

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Target: scaffold0451 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 10421 - 10342
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    |||||||| |||||||||| ||| | ||||| ||||||||| | || || |||| ||| ||||||||| |||||||||||    
T  10421 taagatgttttggaacttgggaatataattcctccctttgtgaagtcttttgaggcctcttgaatcttcattcttcatct 10342  T

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Target: scaffold0386 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 5164 - 5085
Alignment:
Q  254 taagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatcttgattcttcatct 333  Q
    ||||||||||||||||| | ||| | ||||| ||||| ||||| || ||||||| ||| |||||| ||| ||||||||||    
T  5164 taagatgtattggaactagggaaaaaaattcctccctctgtaaagtcttctgaggcctcttgaattttgcttcttcatct 5085  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 88797 - 88690
Alignment:
Q  222 tttcttcgtctttttgggtgtttgctttcatataagatgtattggaacttgagaagagaattcatccctttgtaacgtattctgagaccttttgaatctt 321  Q
    |||||||| || ||| | |||||||||  || |||||||| |||||||||| ||| | ||||  ||||| ||||| || |||||||  ||||||||||||    
T  88797 tttcttcgcctgtttagttgtttgcttcaatgtaagatgtcttggaacttgggaacataatttctccctctgtaaagtcttctgagggcttttgaatctt 88698  T
Q  322 gattcttc 329  Q
     |||||||    
T  88697 cattcttc 88690  T

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