View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_high_24 (Length: 310)
Name: NF3526_high_24
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_high_24 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0325 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39796184 - 39796489
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39796184 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
39796283 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39796284 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
39796383 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39796384 |
caagcagtcagcaaaacacttgagagtttttggttcattgtgctatatgcatatccctgatgcaaagagaagaaagttgggggacaagagtgagcctatg |
39796483 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
39796484 |
atactg |
39796489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 26313802 - 26314107
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26313802 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
26313901 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26313902 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
26314001 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
26314002 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
26314101 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
26314102 |
atactg |
26314107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 43594033 - 43593729
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43594033 |
actgctccttatactccacaacacaatggtttaactgaaagaaggaatagaaacctgcttgaaatgaccaaaagtatgctaaagatgaagaagatgccta |
43593934 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43593933 |
aaacattatgggaagaagcagtaagaactgcaacatacatcttaaacagatgccccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
43593834 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
43593833 |
caagcagtcagcaaaacacttgagagtttttggttcattatgctatatgcatatccctgatgcaaagaaaagaaagtttggggataaaagtgagcctatg |
43593734 |
T |
|
| Q |
301 |
atact |
305 |
Q |
| |
|
||||| |
|
|
| T |
43593733 |
atact |
43593729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 30643405 - 30643513
Alignment:
| Q |
10 |
tatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgcctaatacatttt |
109 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||| | ||| ||||||| ||||| ||||| || | |
|
|
| T |
30643405 |
tatactgcacaacacaatggattagctgaaagaagaaatagaacattgcttgacatgaccagaagtatgttgaagctgaagaatatgccaaataccttct |
30643504 |
T |
|
| Q |
110 |
ggggagaag |
118 |
Q |
| |
|
|||||||| |
|
|
| T |
30643505 |
agggagaag |
30643513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 11755775 - 11755683
Alignment:
| Q |
211 |
gcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatgata |
303 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||| | |||| | | |||||||||||||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
11755775 |
gcaaaatatttgagagtgtttggttccttgtgctccaggcatgttcatgatgcaaagagaaagaagttgggtgatagaagtgaacctatgata |
11755683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 43809851 - 43809546
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43809851 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagcatgctaaagatgaagaagatgccta |
43809752 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43809751 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
43809652 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
43809651 |
caagcagtcagcaaaacacttgagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
43809552 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
43809551 |
atactg |
43809546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 200052 - 199747
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200052 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
199953 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
199952 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
199853 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
199852 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
199753 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
199752 |
atactg |
199747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 314889 - 314584
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
314889 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
314790 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
314789 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
314690 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
314689 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
314590 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
314589 |
atactg |
314584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 30408171 - 30407866
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408171 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
30408072 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408071 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
30407972 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
30407971 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
30407872 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30407871 |
atactg |
30407866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41947604 - 41947909
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
41947604 |
actgttccttatactccacaacacaatggtttggatgaaagaatgaatagaagcctgcttgacatgaccagaagtatgcttaagacgaagaagatgccta |
41947703 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41947704 |
atatattttggggagaagtagtaagaactgcatcatacatcttaaacagatgccccactaagaaatttaatcaaattcctgaagaaatttggttaggatg |
41947803 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41947804 |
caagcagtcagcaaaacacttgagagtttttggttcattatgctatatgcatatccctgatgcaaagagaataaagttgggggataagtgtgagcctatg |
41947903 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
41947904 |
atactg |
41947909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1289114 - 1289419
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1289114 |
actgctccttatactccacaacacaatggtttggttgaaagaaggaataaaagtctgcttgacatgaccaaaagtatgctaaagatgaagaagatgccta |
1289213 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1289214 |
atacattttagggagaactagtaagaactgcagcatgcatcttaaacagatgccccactaagaaacttaatcaaatttctgaggaaatttggttaggatg |
1289313 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1289314 |
caagcagtcagcaaaacacttgagagtttttggttcattatgctatatgcatatccctgatgcaaagagaagaaagctgggggacaagagtgagcctatg |
1289413 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
1289414 |
atactg |
1289419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17784250 - 17784197
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagc |
54 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
17784250 |
actgctccatatactccacaatacaatggtttggctgagagaaggaatataagc |
17784197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 17784104 - 17784047
Alignment:
| Q |
249 |
gcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatgatactg |
306 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||||| | |||| ||||||| |
|
|
| T |
17784104 |
gcatatacatgatgcaaagagaagaaagttgggggacaagagtaaacctacgatactg |
17784047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 18193265 - 18193338
Alignment:
| Q |
5 |
ctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatg |
78 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||| ||||||| || | ||||||||| ||||||||||| |
|
|
| T |
18193265 |
ctccctatactcctcaacacaatggtttagcagaaaggaggaataaaacaatacttgacatggccagaagtatg |
18193338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30697585 - 30697890
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30697585 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagtagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
30697684 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30697685 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
30697784 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
30697785 |
caagcagtcagcaaaacacttgagaatttttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggacaagagtgagcctatg |
30697884 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30697885 |
atactg |
30697890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7101742 - 7101437
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7101742 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
7101643 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7101642 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
7101543 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
7101542 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
7101443 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7101442 |
atactg |
7101437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 16796458 - 16796763
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796458 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
16796557 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796558 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
16796657 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
16796658 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
16796757 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
16796758 |
atactg |
16796763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 12021078 - 12021383
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12021078 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagcatgctaaagatgaagaagatgccta |
12021177 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021178 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
12021277 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
12021278 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
12021377 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
12021378 |
atactg |
12021383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 37679825 - 37680130
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37679825 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagcatgctaaagatgaagaagatgccta |
37679924 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37679925 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
37680024 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37680025 |
caagcagtcagcaaaacacttgagagtgtttggttcattgtgttatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
37680124 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
37680125 |
atactg |
37680130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 40369616 - 40369311
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40369616 |
actgctccttatacttcacaacataatggtttggctgaaagaaggaatagaagtctgcttgacatgaccagaagtatgctaaagatgaagaagatgtcta |
40369517 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40369516 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgctccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
40369417 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
40369416 |
caagcagtcaacaaaacacttgagagtttttggttcattgtgctatatgcatatccctgatgcaaagagaatgaagttgggggacaagagtgagcctatg |
40369317 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
40369316 |
atactg |
40369311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 15064696 - 15064394
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || ||| |||||||||||| |||| ||||||| ||||||||||| ||| | || |||||| ||||| | |
|
|
| T |
15064696 |
actgctccatacactccacaacataatggattagctaaaagaaggaatacaagcttgcttgatatgaccagaagcatgttgaaactgaagagtatgccaa |
15064597 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
| ||||| | ||||| ||||||||| || ||||||||||||||| ||| || ||||| | | ||| ||| | |||||| | ||||| ||| | |
|
|
| T |
15064596 |
acacattacag--agaagttgtaagaactacaacatacatcttaaacaaatgtccaactaaagggcatg-tcagatttccgaagaagtatggttgggaag |
15064500 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
|||||| | |||||||| || || || ||| |||| ||||| |||| |||||||| |||||||||||||||||| | | ||| |||||||||||| || |
|
|
| T |
15064499 |
caagcaagctgcaaaacatttaagggtatttagttctttgtgatataagcatatccctgatgcaaagagaagaaaactagaggacaagagtgagcctgtg |
15064400 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
15064399 |
atactg |
15064394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 47233 - 46928
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47233 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
47134 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47133 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
47034 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
47033 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
46934 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
46933 |
atactg |
46928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7942451 - 7942146
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7942451 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
7942352 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7942351 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
7942252 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
7942251 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
7942152 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7942151 |
atactg |
7942146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27759186 - 27759488
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27759186 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagcatgctaaagatgaagaagatgccta |
27759285 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27759286 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagaaacttaatcaaattcctgaagaaatttggctaggatg |
27759385 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
27759386 |
caagcagtcagcaaaacacttgagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
27759485 |
T |
|
| Q |
301 |
ata |
303 |
Q |
| |
|
||| |
|
|
| T |
27759486 |
ata |
27759488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30429471 - 30429776
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
30429471 |
actgctcattatactccacaacataatggtttggctgaaagaaggaatagaagcatgctcgacatgaccaaaagtatgctaaagatgaataagatgccta |
30429570 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30429571 |
atacattttggagagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagtaacttaatcaaattcctgaagaaatttggttaggatg |
30429670 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
30429671 |
caagcagtcagcaaaacacttgagagtttttggttcattgtgctatatgcatatccctgatgcaaagagaagaaagttggggaacaagagtgagcctatg |
30429770 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30429771 |
atactg |
30429776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 13830472 - 13830168
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
13830472 |
actgctccttacactccacaacataatggtttggctgagagaagaaataaaagtctgcttgacatgactagaagtatgctaaagttgaagaagatgccta |
13830373 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
13830372 |
atacattttggggagaagcagtaagaactacaacatacatcttaaatagatgccccactaagaaacttaatcaaatacctgaagaaatttggttaggttg |
13830273 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||| |||||| | ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13830272 |
caagcagtcagataaacacgtaagagtttttgg-ccattatgctatatgcatatccctgatgcaaagagaagaaagttgggggacaagagtgagcctatg |
13830174 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
13830173 |
atactg |
13830168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 8317872 - 8317567
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317872 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
8317773 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317772 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
8317673 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
8317672 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
8317573 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
8317572 |
atactg |
8317567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 17888996 - 17888691
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
17888996 |
actgctcattatactccacaacataatggtttggctgaaagaaggaatagaagcatgctcgacatgaccaaaagtatgctaaagatgaataagatgccta |
17888897 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17888896 |
atacattttggagagaagcagtaagaactgcagcatacatcttaaacagatgccccactaagtaacttaatcaaattcctgaagaaatttggttaggatg |
17888797 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17888796 |
caagcagtcagcaaaacacttgagagtttttggttcattgtgctatatgaatatccctgatgcaaagagaagaaagttgggggacaagagtgagcctatg |
17888697 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
17888696 |
atactg |
17888691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 17161884 - 17162187
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||| || ||||| |||||||||||||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
17161884 |
actgctccttatactccacaacataatggtttagttgaaagaagaaacagaagtctgcttgacatgacaagtagtatgctcaagttgaagaagatgccta |
17161983 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| || |||||||| | ||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
17161984 |
atacattttggggagaagcagtaagaacttcagcttacatcttgaatagatgccccagaaagaaacttaaacaaattcctcaagaaatttggttaggttg |
17162083 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaa-gaaagttgggggataagagtgagcctat |
299 |
Q |
| |
|
||| ||| |||| |||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
17162084 |
caaccagtcagctaaacacttaagattttttggttcattatgctatatgcatatccctgatgcaaagaaaaggaaagctgggggacaagagtgagcctat |
17162183 |
T |
|
| Q |
300 |
gata |
303 |
Q |
| |
|
|||| |
|
|
| T |
17162184 |
gata |
17162187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 31927003 - 31926720
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31927003 |
actgctccatatactccacaacacaatggtttggctgaaagaagaaataaaagcctgcttgacacgaccagaagtatgctcaagatgaagaagatgccta |
31926904 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31926903 |
atacattttggggagaagcagtaaaaactgcatcttacatattgaacagatggcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
31926804 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggata |
286 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| || || || || | | |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
31926803 |
caagcagttagctaaacacttaagagtttttggctctttatgttacaaggatatccctgatg--gagagaagaaagttgggggata |
31926720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27570099 - 27569958
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27570099 |
actgctccttatactctacaacacaatggtttggcagaaagaaggaatagaagcctgcttgacatgaccagaagtatgcaaaagatgaagaagatgccta |
27570000 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatct |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27569999 |
atacattttggggagaagcagtaagaactgcagcatacatct |
27569958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 27569957 - 27569916
Alignment:
| Q |
265 |
aagagaagaaagttgggggataagagtgagcctatgatactg |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27569957 |
aagagaagaaagttgggggacaagagtgagcctatgatactg |
27569916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 44149347 - 44149652
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44149347 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
44149446 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44149447 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
44149546 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
44149547 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
44149646 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
44149647 |
atactg |
44149652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31356951 - 31357255
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31356951 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
31357050 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31357051 |
atacattttggggagaagcagtaagaactgcaacatacatcttaaacagatg-ccacctaagaaacttaatcaaattcctgaagaaatttggttaggatg |
31357149 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
31357150 |
caagcagtcagcaaaacacttgagagtttttggttcattatgctatatgcatatctctgatgcaaagagaagaaagccgggggacaagagtgaacctatg |
31357249 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
31357250 |
atactg |
31357255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 50630299 - 50629994
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50630299 |
actgctccttatactccacaacacaatggtttggctgaaaggaggaatagaagtcagcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
50630200 |
T |
|
| Q |
101 |
atacatttt-ggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggat |
199 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50630199 |
atacattttgggggagaagtagtaagaattgcaccatacatcttaaacagatgccccactaaaaaatttaatcaaattcctgaagaaatttggttaggat |
50630100 |
T |
|
| Q |
200 |
gcaagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctat |
299 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
50630099 |
gcaagcagtcagcaaaa-acttgagagtttttggttcattgtgctatatgcatatccctgatgcaaagagaagaaagttgggggataagattgagtctaa |
50630001 |
T |
|
| Q |
300 |
gatactg |
306 |
Q |
| |
|
||||||| |
|
|
| T |
50630000 |
gatactg |
50629994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 8053181 - 8053486
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8053181 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
8053280 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8053281 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
8053380 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
8053381 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
8053480 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
8053481 |
atactg |
8053486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 36672840 - 36673145
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36672840 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
36672939 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36672940 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
36673039 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
36673040 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
36673139 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
36673140 |
atactg |
36673145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 27403493 - 27403188
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27403493 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaataaaagcctgtttgacatgaccagaagtatgctaaagatgaagaagatgccta |
27403394 |
T |
|
| Q |
101 |
atacattttgggg-agaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggat |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27403393 |
atacattttgggggagaagcagtaagaactgcaacatacatctttaacagatgcccaagtaagaaacttaatcaaattcctgaagaaatttggttaggat |
27403294 |
T |
|
| Q |
200 |
gcaagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctat |
299 |
Q |
| |
|
||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27403293 |
gcaggcagtcagcaaatcatttgagagtttttggttcattgtgctatatgcatatccctgatgcaaagagaagaaagctgggggaaaagagtgagcctat |
27403194 |
T |
|
| Q |
300 |
gatact |
305 |
Q |
| |
|
|||||| |
|
|
| T |
27403193 |
gatact |
27403188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 35952800 - 35952501
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35952800 |
actgctccttatactccacaatacaatggtttggctgaaataaggaataaaagcctgcttgagatgaccagaagtatgctaaagatgaagaagatgccta |
35952701 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35952700 |
atacattttgggaagaagcagtaggaactgcagcatacatcttaaa------ctccactaagaaacttaatcaaattcgtgaagaaatttggttaggatg |
35952607 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
35952606 |
caagcagtcagtaaaacatctgagagtttttggttcactatgttatatgcatatccctgatgcaaagagaagaaagctgggtgataagagtgagcctatg |
35952507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 54169712 - 54169407
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54169712 |
actgctctttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
54169613 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54169612 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
54169513 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
54169512 |
caagcagtcagcaaaacacttaagagtgtttggttcattgtgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatg |
54169413 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
54169412 |
atactg |
54169407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 43552081 - 43552386
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43552081 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaacataagcttgcttgacatgaccagaagtatgcaaaagatgaagaagatgccta |
43552180 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43552181 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgtcccactaagaaacttaatcaaattcttgaagatatttggttaggatg |
43552280 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
43552281 |
caagcagtcagcaaaacacttgagagtttttggttcattatgctatatgtatatccctgatgcaaagagaagaaagatgggggacaagagtgaacctatg |
43552380 |
T |
|
| Q |
301 |
atactg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
43552381 |
atactg |
43552386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 53356565 - 53356263
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgccta |
100 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
53356565 |
actgctccatacactgcacaacataatggtttggctgagagaaggaatagaagcatgcttgacatgaccagaagtatgctcaagctgaagaagatgccta |
53356466 |
T |
|
| Q |
101 |
atacattttggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatg |
200 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||| ||||||| |||||||| |||||| || || |
|
|
| T |
53356465 |
atactttttagggagaagcagtaacaactgcagcctacatcttgaacagatgccccactaagaaacttgatcaaatacctgaagagatttggactggttg |
53356366 |
T |
|
| Q |
201 |
caagcagccagcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatg |
300 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
53356365 |
caagcagtcagctaaacacttaagagtttttggttcattatgctatatgcatatccctgatgaaaagagagtgaagctgggggacaagagtgagcctatg |
53356266 |
T |
|
| Q |
301 |
ata |
303 |
Q |
| |
|
||| |
|
|
| T |
53356265 |
ata |
53356263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 22929552 - 22929259
Alignment:
| Q |
10 |
tatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaagtatgctaaagatgaagaagatgcctaatacatttt |
109 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||| ||||||| | ||||||||||| ||||| ||| |||| ||||||| || | ||||| || | |
|
|
| T |
22929552 |
tatacaccacaacataatggtttagctgagagaagaaatagaacattacttgacatgactagaagcatgttaaaattgaagaatgtgtcaaatactttat |
22929453 |
T |
|
| Q |
110 |
ggggagaagcagtaagaactgcagcatacatcttaaacagatgccctactaagaaacttaatcaaattcctgaagaaatttggttaggatgcaagcagcc |
209 |
Q |
| |
|
|||||||| | | | |||| | ||||||| | || |||| || || ||||||||| || | ||||| |||||| | ||| | ||| | |||||| | |
|
|
| T |
22929452 |
ggggagaatctatgaagactgtaacatacattatgaatagatttccaacaaagaaacttgataagattccagaagaagtatggatgggaaggaagcagtc |
22929353 |
T |
|
| Q |
210 |
agcaaaacacttgagagtttttggttcattgtgctatatgcatatccttgatgcaaagagaagaaagttgggggataagagtgagcctatgata |
303 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||| |||| | | ||||||||||||| ||| | || ||||| ||||| ||||||||| |
|
|
| T |
22929352 |
tgcaaaacacttaagagtgtttggttgcttgtgctataagcatgttttagatgcaaagagaaagaagctaggtgataaaagtgaacctatgata |
22929259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 22929665 - 22929601
Alignment:
| Q |
10 |
tatactccacaacacaatggtttggctgaaagaaggaatagaagcctgcttgacatgaccagaag |
74 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
22929665 |
tatactccacaacataatggtttagctgagagaagaaatagaacattgcttgacatgaccagaag |
22929601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10 - 62
Alignment:
| Q |
1 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaag |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10 |
actgctccttatactccacaacacaatggtttggctgaaagaaggaatagaag |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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