View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_high_45 (Length: 223)
Name: NF3526_high_45
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 17050620 - 17050824
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
17050620 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaattttcaataat |
17050719 |
T |
|
| Q |
101 |
tagacatgaaaaaactaaaatctaccattaatgtagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
17050720 |
tagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccatgatatcacggtgaatatggacaaacgatttaataa |
17050819 |
T |
|
| Q |
201 |
gttct |
205 |
Q |
| |
|
||||| |
|
|
| T |
17050820 |
gttct |
17050824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 12926040 - 12926244
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
12926040 |
cacatattcagcaaccactttgaccaacatcgcaccgccacacaccatccatttcttacgattgtaacatgttccaaaatgaaaaccaattttcaattat |
12926139 |
T |
|
| Q |
101 |
tagacatgaaaaaactaaaatctaccattaatgtagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
12926140 |
tagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccatgacatctcggtgaatatggacaaacgatttaatat |
12926239 |
T |
|
| Q |
201 |
gttct |
205 |
Q |
| |
|
||||| |
|
|
| T |
12926240 |
gttct |
12926244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 40649516 - 40649349
Alignment:
| Q |
38 |
ccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatctaccattaatgtaga |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40649516 |
ccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaattttcaatatttagacatgaaaaaactaaaatctaccattaatgttga |
40649417 |
T |
|
| Q |
138 |
aaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatatgttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
40649416 |
aaaaggttgtttcagtatcaataaccatgacatcacggtgaatatggacaaacgatttaatatgttct |
40649349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 20794478 - 20794648
Alignment:
| Q |
34 |
accaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatctaccattaatg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20794478 |
accaccatacaccatccatttcttacgattgtaaca-gttccaagatgaaaaccaattttcaataattagacatgaaaaaactaaaatctatcattaatg |
20794576 |
T |
|
| Q |
134 |
tagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatatgttct |
205 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
20794577 |
ttgaaaaaagttgtttcggtatcaataaccatgacatcacggtgaatatggacaaacgatttaatatgttct |
20794648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 31390034 - 31389909
Alignment:
| Q |
45 |
ccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatctaccattaatgtagaaaaaggt |
144 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||| |
|
|
| T |
31390034 |
ccatccatttcttacgattgcaaca-gtttcaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatccaccattaatattgaaaagggt |
31389936 |
T |
|
| Q |
145 |
tgtttcagtatcaataaccatgacatc |
171 |
Q |
| |
|
|||||| ||| |||||||||||||||| |
|
|
| T |
31389935 |
tgtttcggtaacaataaccatgacatc |
31389909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38930492 - 38930538
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacacca |
47 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38930492 |
cacaaattcaacaaccactttgaccaccattgcaccaccacacacca |
38930538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8436568 - 8436374
Alignment:
| Q |
11 |
gcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataattagacatgaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8436568 |
gcaaccactttgaccaccatagcaccaccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaatttttaataattagacatgaa |
8436469 |
T |
|
| Q |
111 |
aaaactaaaatctaccattaatgtagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatatgttct |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
8436468 |
aaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccataacatcacggtgaatatggacaaacgatttaatatgttct |
8436374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8440113 - 8439919
Alignment:
| Q |
11 |
gcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataattagacatgaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8440113 |
gcaaccactttgaccaccatagcaccaccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaatttttaataattagacatgaa |
8440014 |
T |
|
| Q |
111 |
aaaactaaaatctaccattaatgtagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatatgttct |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
8440013 |
aaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccataacatcacggtgaatatggacaaacgatttaatatgttct |
8439919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38923533 - 38923487
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacacca |
47 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38923533 |
cacaaattcagcaaccactttgaccaccactgcaccaccacacacca |
38923487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 32859400 - 32859588
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaacatgttccaaaatgaaaatcaattttcaataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32859400 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacaccatccatttctt---------------tccaaaatgaaaatcaattttcaataat |
32859484 |
T |
|
| Q |
101 |
tagacatgaaaaaactaaaatctaccattaatgtagaaaaaggttgtttcagtatcaataaccatgacatcacgatgaatatggacaaacaatttaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
32859485 |
tagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccatgacatcacggtcaatatggacaaacaatttaatat |
32859584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 668971 - 668925
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacacca |
47 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
668971 |
cacaaattcaacaaccactttgaccaccattgcaccaccacacacca |
668925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 8383757 - 8383687
Alignment:
| Q |
71 |
gttccaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatctaccattaatgtagaaaaa |
141 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| ||||| |||||| ||||||||| | |||||| |
|
|
| T |
8383757 |
gttccaaaatggcaatcaattttaaataattagacatgtaaaaagtaaaattcaccattaatattgaaaaa |
8383687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 45235823 - 45235780
Alignment:
| Q |
6 |
attcagcaaccactttgaccaccatcgcaccaccatacaccatc |
49 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
45235823 |
attcaacaaccactttgaccaccattgcaccaccacacaccatc |
45235780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26610526 - 26610572
Alignment:
| Q |
1 |
cacatattcagcaaccactttgaccaccatcgcaccaccatacacca |
47 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
26610526 |
cacaaattcaacaaccactttgaccaccattgcaccaccacacacca |
26610572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University