View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_10 (Length: 478)
Name: NF3526_low_10
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Original strand, 33276795 - 33277238
Alignment:
| Q |
23 |
ggtgcaatattaggtggtggaagtgatgaagatgttgaaaaactgcgaaaattcgcgagttatattggtttattgtttcaggttgttgatgatattcttg |
122 |
Q |
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| T |
33276795 |
ggtgcaatattaggtggtggaagtgatgaagatgttgaaaaactgcgaaaattcgcgacatatattggtttattgtttcaggttgttgatgatattcttg |
33276894 |
T |
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| Q |
123 |
atgtgacgaaatcttcacaagagttagggaaaactgctgggaaagatttggtagctgataaggttacttatcctaagcttttagggattgagaaatcgaa |
222 |
Q |
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| T |
33276895 |
atgtgacgaaatcttcacaagagttagggaaaactgctgggaaagatttggtagctgataaggttacttatcctaagcttttagggattgagaaatcgaa |
33276994 |
T |
|
| Q |
223 |
agagtttgctgagaaattgaaccgtgatgcacaagaacaactttctgggtttgatttgaataaagctgctcctttgattgctttggctaattacattgct |
322 |
Q |
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| T |
33276995 |
agagtttgctgagaaattgaaccgtgatgcacaagaacaactttctgggtttgatttgaataaatctgctcctttgattgctttggctaattacattgct |
33277094 |
T |
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| Q |
323 |
tataggcaaaactagatttgttttgtttattgttgtaatcttaaattattaaacagtttaggagatttagatttgtttatctattggggaatgtataaaa |
422 |
Q |
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| T |
33277095 |
tataggcaaaactaga-ttgttttgtttattgttgtaatgttaaattattaaacagtttaggagatttagatttgtttatctattggggaatgtataaaa |
33277193 |
T |
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| Q |
423 |
taattgttgaattatttccccttttcaatgtgtttttgcgttcat |
467 |
Q |
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| T |
33277194 |
taattgttgaattatttccccttttcaatgtgtttttgtgttcat |
33277238 |
T |
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Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 7340873 - 7340714
Alignment:
| Q |
83 |
tatattggtttattgtttcaggttgttgatgatattcttgatgtgacgaaatcttcacaagagttagggaaaactgctgggaaagatttggtagctgata |
182 |
Q |
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|||||||| ||||||||||| ||||||||||| ||||||||||| || ||||| || | || ||||||||||||||||||||||||||| ||||||| |
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| T |
7340873 |
tatattggattattgtttcaagttgttgatgacattcttgatgttactaaatcatctgaggaattagggaaaactgctgggaaagatttgactgctgata |
7340774 |
T |
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| Q |
183 |
aggttacttatcctaagcttttagggattg-agaaatcgaaagagtttgctgagaaattga |
242 |
Q |
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| T |
7340773 |
aagctacttatcctaagctttt-gggattggaaaaatctaaggagtttgctgacaaattga |
7340714 |
T |
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