View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_13 (Length: 451)
Name: NF3526_low_13
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_13 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 44546181 - 44545756
Alignment:
| Q |
16 |
ataaacaaagagaaagagtgagagagnnnnnnnttgttatcacaagttgcaaaaatatatataaattgaactttatttccaaaaacaaattttacactgt |
115 |
Q |
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| T |
44546181 |
ataaacaaagagaaagagtgagagagaaaaaaattgttatgacaagttgcaaaaatata----aattgaactttatttccaaaaacaaattttacactgt |
44546086 |
T |
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| Q |
116 |
catctagtataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
215 |
Q |
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| T |
44546085 |
catctagtataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcatcaatagttgattcatattagatgttagagtaaacta |
44545986 |
T |
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| Q |
216 |
cgaataaattcattaaacttttgataaaaacaagaataggtaaagaatgcgtactggaactggaactggaactggaagcatcaagttctttaacagcctt |
315 |
Q |
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| T |
44545985 |
cgaataaattgattaaacttttgataaaaacaagaataggtaaagaatgcgtactggaactggaactggaactggaagcatcaagttctttaacagcctt |
44545886 |
T |
|
| Q |
316 |
catgaattgctcatgtaattctaaagaccataccacacgctccttcttcgtcttcttcgtctt---------ctttgttttctttgtcgggggtggttcg |
406 |
Q |
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| T |
44545885 |
catgaattgctcatgtaattctaaagaccataccacacgctccttcttcgtcttcttcgtcttctttctcttctttgtcttctttgtcgggggtggttcg |
44545786 |
T |
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| Q |
407 |
ggtatatcttcgtcatttaagcataaattt |
436 |
Q |
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| T |
44545785 |
ggtatatcttcgtcatttaagcataaattt |
44545756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 33481370 - 33481291
Alignment:
| Q |
136 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
215 |
Q |
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| T |
33481370 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
33481291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 5311 - 5390
Alignment:
| Q |
136 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
215 |
Q |
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||||||||| |||||||| ||||| ||| |||||| || | |||||||| |||||||||||||||||| |||||||| |
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| T |
5311 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
5390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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