View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_15 (Length: 417)
Name: NF3526_low_15
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 46025262 - 46025636
Alignment:
| Q |
14 |
cagagatggagggagtaaaaacaaaatatatataaaatagaaactgattcatctatcacattagaatgttgtcctaatcttgctccgtttattgttaaaa |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46025262 |
cagagatggagggagtaaaaacaaaatat--ataaaatagaaactgattcatctatcacattagaatgttgtcctaatcttgctccgtttattgttaaaa |
46025359 |
T |
|
| Q |
114 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgctaatagataactctatacacactt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46025360 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgctaatagataactctatacacactt |
46025459 |
T |
|
| Q |
214 |
gtaggagcttccttaatacacacttctagatacattccacacttttctagagtaagtacttttagattattctaactttcaaattataattaagaagctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46025460 |
gtaggagcttccttaatacacacttctagatacattccacacttttctagagtaagtacttttagattattctaactttcaaattataattaagaagctc |
46025559 |
T |
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| Q |
314 |
ccaatactcctttgtattctttatgaaccctaataggacttggttgaggcggtggaaaaaggcttcaaacattttaa |
390 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46025560 |
ccaatactcctttgtatttcttatgaaccctaataggacttggttgaggcggtggaagaaggcttcaaacattttaa |
46025636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 46262396 - 46262022
Alignment:
| Q |
14 |
cagagatggagggagtaaaaacaaaatatatataaaatagaaactgattcatctatcacattagaatgttgtcctaatcttgctccgtttattgttaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
46262396 |
cagagatggagggagtaaaaacaaaatatata--aaatagaaactgattcatctatcacaatagaatgttgtcttaatcttgctccgtttattgttaaaa |
46262299 |
T |
|
| Q |
114 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgctaatagataactctatacacactt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262298 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgactacaaggaggaatttacaagtgctaatagataactctatacacactt |
46262199 |
T |
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| Q |
214 |
gtaggagcttccttaatacacacttctagatacattccacacttttctagagtaagtacttttagattattctaactttcaaattataattaagaagctc |
313 |
Q |
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| T |
46262198 |
gcaggagcttccttaatacacacttctagatacattccacacttttctagagtaagtacttttagattattctaacttttaaattataattaagaagctc |
46262099 |
T |
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| Q |
314 |
ccaatactcctttgtattctttatgaaccctaataggacttggttgaggcggtggaaaaaggcttcaaacattttaa |
390 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262098 |
ccaatactcctttgtattccttatgaaccctaataggacttggttgaggcggtggaaaaaggcttcaaacattttaa |
46262022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 46306356 - 46306194
Alignment:
| Q |
14 |
cagagatggagggagtaaaaacaaaatatatataaaatagaaactgattcatctatcacattagaatgttgtcctaatcttgctccgtttattgttaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46306356 |
cagagatggagggagtaaaaacaaaatatata--aaatagaaactgattcatctatcacattagaatgttgtcctaatcttgctccgtttattgttaaaa |
46306259 |
T |
|
| Q |
114 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaa |
178 |
Q |
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| T |
46306258 |
ggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaa |
46306194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 91 - 390
Target Start/End: Complemental strand, 46306062 - 46305760
Alignment:
| Q |
91 |
tcttgctccgtttattgttaaaaggaatggaagtatttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgct |
190 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||| ||||| || ||||| |
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| T |
46306062 |
tcttgctccgtttattgttaaaagcaatggaagtatttctagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgct |
46305963 |
T |
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| Q |
191 |
aatagataactctatacacacttgtaggagcttccttaatacacacttctagatacattccacacttttctaga----gtaagtacttttagattattct |
286 |
Q |
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|||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||| || ||||||| | ||| || |||||||||||||| |
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| T |
46305962 |
aatagataactctagacacacttgtagaagcttccttgatacacacttctagataaattcctcaattttctataatttttaattatttttagattattct |
46305863 |
T |
|
| Q |
287 |
aactttcaaattataattaagaagctcccaatactcctttgtattctttatgaaccctaataggacttggttgaggcgg-tggaaaaaggcttcaaacat |
385 |
Q |
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|| ||||||||||| | ||||| ||| |||| ||||| |||||||| |||||||| |||||||||||| | |||| ||| ||||| ||||||||||| || |
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| T |
46305862 |
aaatttcaaattatta-taagaggcttccaacactcc-ttgtattccttatgaacactaataggacttaggtgagacggatggaagaaggcttcaaatat |
46305765 |
T |
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| Q |
386 |
tttaa |
390 |
Q |
| |
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||||| |
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| T |
46305764 |
tttaa |
46305760 |
T |
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