View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_16 (Length: 391)

Name: NF3526_low_16
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_16
NF3526_low_16
[»] chr2 (5 HSPs)
chr2 (17-282)||(38588149-38588426)
chr2 (54-178)||(38583479-38583602)
chr2 (66-178)||(8986927-8987038)
chr2 (66-178)||(8985574-8985685)
chr2 (76-178)||(32291155-32291256)
[»] chr5 (4 HSPs)
chr5 (212-309)||(42308836-42308933)
chr5 (77-178)||(11320486-11320585)
chr5 (75-131)||(24137644-24137700)
chr5 (77-105)||(28432261-28432289)
[»] chr7 (9 HSPs)
chr7 (66-167)||(6840606-6840706)
chr7 (66-178)||(46963064-46963175)
chr7 (101-179)||(6841471-6841548)
chr7 (66-179)||(2628243-2628355)
chr7 (77-178)||(15614261-15614361)
chr7 (77-178)||(46964429-46964529)
chr7 (76-140)||(44337384-44337448)
chr7 (64-139)||(21814465-21814539)
chr7 (19-115)||(26403509-26403604)
[»] chr4 (5 HSPs)
chr4 (66-178)||(16871651-16871762)
chr4 (70-139)||(37945522-37945591)
chr4 (75-178)||(16543360-16543462)
chr4 (82-156)||(16869528-16869601)
chr4 (75-128)||(24131825-24131878)
[»] chr1 (4 HSPs)
chr1 (66-179)||(6696014-6696126)
chr1 (77-178)||(15629358-15629458)
chr1 (81-139)||(15630161-15630219)
chr1 (77-139)||(28665018-28665079)
[»] chr6 (7 HSPs)
chr6 (75-141)||(22868497-22868563)
chr6 (75-139)||(9290663-9290727)
chr6 (66-137)||(18792843-18792914)
chr6 (76-139)||(18984535-18984598)
chr6 (77-178)||(10741772-10741871)
chr6 (97-179)||(21862688-21862769)
chr6 (75-177)||(33423986-33424087)
[»] chr3 (10 HSPs)
chr3 (75-141)||(42531325-42531391)
chr3 (66-178)||(814385-814498)
chr3 (75-178)||(46691458-46691559)
chr3 (75-178)||(50297460-50297562)
chr3 (77-139)||(50294694-50294756)
chr3 (85-181)||(814257-814351)
chr3 (64-139)||(16463005-16463079)
chr3 (83-141)||(42530625-42530683)
chr3 (66-129)||(30057133-30057196)
chr3 (77-139)||(18088145-18088206)
[»] chr8 (4 HSPs)
chr8 (90-178)||(43615458-43615545)
chr8 (76-140)||(20241062-20241126)
chr8 (76-140)||(20251941-20252005)
chr8 (75-115)||(33199472-33199512)
[»] scaffold0511 (1 HSPs)
scaffold0511 (66-137)||(11227-11298)
[»] scaffold0002 (1 HSPs)
scaffold0002 (77-179)||(406256-406357)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 38588149 - 38588426
Alignment:
Q  17 tagtttcaagaaagaataaagggactgctagaatttcaatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 116  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588149 tagtttcaagaaagaataaagggacggttagaatttcaatagaatataaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 38588248  T
Q  117 gcactctaactta-------------ctgatataaaagacccaacaacttaagtctaatattttcttatctaacaacttcatcatcccaatccatnnnnn 203  Q
      |||||||||||             || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||         
T  38588249 ctactctaacttattaatctaacttactaatataaaagacc-aataacttaagtctaatattttcttatctaacaacttcatcatcccaatccataaaaa 38588347  T
Q  204 nntgctgccttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 282  Q
      ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588348 aatgctgccttcctcaatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 38588426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 38583479 - 38583602
Alignment:
Q  54 aatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaactt 153  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||   ||||||||||| |||| |||| ||||| || ||    
T  38583479 aatagaatacaaaataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatat-aaaggcccaataattt 38583577  T
Q  154 aagtctaatattttcttatctaaca 178  Q
    ||| |||||||||| ||||||||||    
T  38583578 aagcctaatattttattatctaaca 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 8987038 - 8986927
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| ||||||| | ||||| |||||||| |||||| |    
T  8987038 aatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 8986940  T
Q  166 ttcttatctaaca 178  Q
    || ||||||||||    
T  8986939 ttattatctaaca 8986927  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 8985685 - 8985574
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||| ||||||||| ||||||| |  |||| |||||||| |||||| |    
T  8985685 aatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatg-tccaataacttaagcctaatact 8985587  T
Q  166 ttcttatctaaca 178  Q
    || ||||||||||    
T  8985586 ttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 32291256 - 32291155
Alignment:
Q  76 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatcta 175  Q
    |||||||||||||||||||| ||||||||||||| | ||| | ||||||||||||| |||| |||||| ||| ||||||||   |||| ||| |||||||    
T  32291256 cattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatat-aaagacacaataacttaagctcaatactttattatcta 32291158  T
Q  176 aca 178  Q
    |||    
T  32291157 aca 32291155  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 42308836 - 42308933
Alignment:
Q  212 cttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcctatgccactagaaaggtaagtgctaaa 309  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||    
T  42308836 cttcctccatatttcagcttcttgtttcattctcttttgtttgctttttcttcttgcaagtgcaaccatcctatgccattggaaaggtaaatgctaaa 42308933  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 11320486 - 11320585
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    ||||||||||||||||||| ||||||||||||||  ||| | |||| |||||||| |||| ||||| |||| |||||||||||||||  || ||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatat-aaagagccaataacttaagtctaatacattattatctaa 11320583  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 24137700 - 24137644
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttact 131  Q
    |||||||| |||||||||||| |||||||||||||||||||   |||||||||||||    
T  24137700 acattacagaaggttataagagaatatataataaaacctaatagactctaacttact 24137644  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 28432261 - 28432289
Alignment:
Q  77 attacaaaaggttataagaaaatatataa 105  Q
    |||||||||||||||||||||||||||||    
T  28432261 attacaaaaggttataagaaaatatataa 28432289  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 6840606 - 6840706
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||  |||||    
T  6840606 aatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatatt 6840704  T
Q  166 tt 167  Q
    ||    
T  6840705 tt 6840706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 46963064 - 46963175
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | ||||| |||||||| |||||| |    
T  46963064 aatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 46963162  T
Q  166 ttcttatctaaca 178  Q
    || ||||||||||    
T  46963163 ttattatctaaca 46963175  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 6841471 - 6841548
Alignment:
Q  101 tataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaacaa 179  Q
    |||||||||| |||||| |||||||||||||||||| |||| ||||| ||||||||||  ||||||| |||||||||||    
T  6841471 tataataaaatctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatattttattatctaacaa 6841548  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 2628243 - 2628355
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || |||||||||||  |||| ||| ||||||||||||||||||| | ||||||||||||| |||| |||||| ||| ||||||||   |||| |    
T  2628243 aatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatat-aaagactcaataacttaagctcaatact 2628341  T
Q  166 ttcttatctaacaa 179  Q
    || |||||||||||    
T  2628342 ttattatctaacaa 2628355  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 15614261 - 15614361
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||||||||| || |||| ||||  |||| |||||||| | |||| ||| ||||||||    
T  15614261 attacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatat-aaaggtccaataacttaagcccaatactttattatctaa 15614359  T
Q  177 ca 178  Q
    ||    
T  15614360 ca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 46964429 - 46964529
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    ||||||||| ||||||||| |||||||||||||| |||| | |||||||| |||| ||||||| | ||||| |||||||| |||||  ||| ||||||||    
T  46964429 attacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatg-cccaataacttaagcctaatcctttattatctaa 46964527  T
Q  177 ca 178  Q
    ||    
T  46964528 ca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 44337448 - 44337384
Alignment:
Q  76 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 140  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  44337448 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 44337384  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 21814539 - 21814465
Alignment:
Q  64 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  21814539 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 21814465  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26403604 - 26403509
Alignment:
Q  19 gtttcaagaaagaataaagggactgctagaatttcaatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaa 115  Q
    ||||||| | |||| |||| |||  |||| |||||||||||||| | |||||  | ||||||||||| ||||||||| |||||||||||||| ||||    
T  26403604 gtttcaatatagaacaaagagacgactaggatttcaatagaata-acaatagcataacattacaaaaagttataagagaatatataataaaatctaa 26403509  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 16871762 - 16871651
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||| | ||||| |||||||| |||||| |    
T  16871762 aatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 16871664  T
Q  166 ttcttatctaaca 178  Q
    || ||||||||||    
T  16871663 ttattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 37945591 - 37945522
Alignment:
Q  70 gattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    |||| ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| |||||||    
T  37945591 gattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 16543462 - 16543360
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatct 174  Q
    ||||| |||||||||| | || ||||||||||||||| ||| | ||||||||||||| |||||||||  |||| |||||||||| | || ||| ||||||    
T  16543462 acattgcaaaaggttacatgagaatatataataaaacttaatgaactctaacttactaatataaaag-gccaataacttaagtccattactttattatct 16543364  T
Q  175 aaca 178  Q
    ||||    
T  16543363 aaca 16543360  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 16869601 - 16869528
Alignment:
Q  82 aaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaag 156  Q
    |||| ||||||||| | |||||||||||| |||| | ||||||||||||| ||||||||| ||||| ||||||||    
T  16869601 aaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaaag-cccaataacttaag 16869528  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 24131878 - 24131825
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaactt 128  Q
    ||||||||||| ||||||||| || |||||||||||||||| | ||||||||||    
T  24131878 acattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 6696126 - 6696014
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatatt 165  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | ||||| |||||||| |||||| |    
T  6696126 aatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 6696028  T
Q  166 ttcttatctaacaa 179  Q
    || |||||||||||    
T  6696027 ttattatctaacaa 6696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 15629358 - 15629458
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    ||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| |||| ||||  |||| |||||||| | |||||||| ||||||||    
T  15629358 attacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatat-aaaggtccaataacttaagcccaatattttattatctaa 15629456  T
Q  177 ca 178  Q
    ||    
T  15629457 ca 15629458  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 15630161 - 15630219
Alignment:
Q  81 caaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    ||||||||||||||| |||||||||||||||||||   ||||||||||||| |||||||    
T  15630161 caaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaa 15630219  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 28665079 - 28665018
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  28665079 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 28665018  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 22868563 - 22868497
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaag 141  Q
    ||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||    
T  22868563 acattacaaaaagttataagagaatatataataaaacctaatggactctaacttactaatataaaag 22868497  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 9290663 - 9290727
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  9290663 acattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaa 9290727  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 18792843 - 18792914
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 137  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  18792843 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 18792914  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 18984598 - 18984535
Alignment:
Q  76 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    |||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||||| |||||||    
T  18984598 cattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaa 18984535  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 10741871 - 10741772
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    ||||||||| ||||| ||| |||||||||| ||| |||| | |||||||||| || |||| |||||||||| |||||||| | |||||||| ||||||||    
T  10741871 attacaaaatgttatgagagaatatataat-aaatctaatggactctaactttctaatat-aaagacccaataacttaagcccaatattttattatctaa 10741774  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 21862769 - 21862688
Alignment:
Q  97 aatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaacaa 179  Q
    ||||||||||||||||||| |||||||||||| || |||| |||||||||| | ||||||   |||| ||| |||||||||||    
T  21862769 aatatataataaaacctaatgcactctaacttgctaatat-aaagacccaatagcttaagctcaatactttattatctaacaa 21862688  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 33423986 - 33424087
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatct 174  Q
    |||||||||| ||||||  || ||||||||||||||||||| | ||| ||||||||| |||| |||||| ||| ||||||||   |||| ||| ||||||    
T  33423986 acattacaaagggttatgggagaatatataataaaacctaatgaactttaacttactaatat-aaagacgcaataacttaagctcaatactttattatct 33424084  T
Q  175 aac 177  Q
    |||    
T  33424085 aac 33424087  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 42531391 - 42531325
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaag 141  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||| |||||||||    
T  42531391 acattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaag 42531325  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 814385 - 814498
Alignment:
Q  66 aatagattgacattacaaaaggttata--agaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaata 163  Q
    ||||| || ||||||||| ||||||||  |||| ||||||||  |||||||| | ||||||||||||| ||||||| | ||||| |||||||||| ||||    
T  814385 aatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaata 814483  T
Q  164 ttttcttatctaaca 178  Q
     ||| ||||||||||    
T  814484 ctttattatctaaca 814498  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 46691458 - 46691559
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatct 174  Q
    ||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||  ||| ||||  |||| |||||||||  |||| ||| ||||||    
T  46691458 acattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtat-aaaggtccaataacttaagttcaatactttattatct 46691555  T
Q  175 aaca 178  Q
    ||||    
T  46691556 aaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 50297562 - 50297460
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatct 174  Q
    ||||||||||||||||||||  || |||||||||||| ||| | ||||||||||||| |||| |||||| ||| ||||||||   |||| ||| ||||||    
T  50297562 acattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatat-aaagactcaataacttaagcacaatactttattatct 50297464  T
Q  175 aaca 178  Q
    ||||    
T  50297463 aaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 50294756 - 50294694
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    ||||||||| ||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  50294756 attacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 814351 - 814257
Alignment:
Q  85 aggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaacaact 181  Q
    ||||||||||| |||||| ||  |||||||| | ||||||||||||| ||||||| | ||||| |||||||||| |||| ||| |||||||||||||    
T  814351 aggttataagagaatata-aacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaatactttattatctaacaact 814257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 16463079 - 16463005
Alignment:
Q  64 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  16463079 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 16463005  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 42530683 - 42530625
Alignment:
Q  83 aaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaag 141  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||| ||||| |||||||||    
T  42530683 aaaggttataagagaatatataataaaacctaatgaactttaatttactaatataaaag 42530625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 30057196 - 30057133
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaactta 129  Q
    ||||| || |||||||||||| |||||||| ||||||||| |||| |||| | |||||||||||    
T  30057196 aatagcttaacattacaaaagattataagagaatatataacaaaatctaatggactctaactta 30057133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 18088145 - 18088206
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 139  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  18088145 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 18088206  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 43615545 - 43615458
Alignment:
Q  90 ataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaaca 178  Q
    ||||||||||||||||||||| |||| | ||||||||||||| ||||||||| | ||| |||| ||||  |||||||| ||||||||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaag-ctcaataactaaagttcaatattttattatctaaca 43615458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 20241126 - 20241062
Alignment:
Q  76 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 140  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20241126 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20241062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 20251941 - 20252005
Alignment:
Q  76 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 140  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20251941 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20252005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 33199512 - 33199472
Alignment:
Q  75 acattacaaaaggttataagaaaatatataataaaacctaa 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  33199512 acattacaaaagattataaggaaatatataataaaacctaa 33199472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 11298 - 11227
Alignment:
Q  66 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 137  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  11298 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 11227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 406256 - 406357
Alignment:
Q  77 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaacaacttaagtctaatattttcttatctaa 176  Q
    |||| |||||||||||| | ||||||||||||||| ||| | |||||||||| || |||| |||| ||||| |||||||  |||||| ||| ||||||||    
T  406256 attagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatat-aaaggcccaataacttaaacctaatactttattatctaa 406354  T
Q  177 caa 179  Q
    |||    
T  406355 caa 406357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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