View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_19 (Length: 349)

Name: NF3526_low_19
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_19
NF3526_low_19
[»] chr3 (2 HSPs)
chr3 (10-316)||(39712519-39712825)
chr3 (10-299)||(11528147-11528433)
[»] chr2 (5 HSPs)
chr2 (67-282)||(28166469-28166684)
chr2 (67-282)||(44905314-44905529)
chr2 (94-275)||(37952509-37952690)
chr2 (65-316)||(37896715-37896966)
chr2 (65-283)||(37958224-37958442)
[»] chr7 (1 HSPs)
chr7 (67-282)||(38757450-38757665)
[»] chr4 (2 HSPs)
chr4 (67-282)||(11149048-11149263)
chr4 (67-282)||(34538932-34539147)
[»] chr1 (2 HSPs)
chr1 (67-282)||(13228303-13228518)
chr1 (67-274)||(40768428-40768635)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 39712825 - 39712519
Alignment:
Q  10 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggcttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39712825 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaatgacattgaaaatgacacattcactcttccattgttggcttt 39712726  T
Q  110 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712725 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 39712626  T
Q  210 tttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatcttattttaa 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712625 tttatccatcaaggaggtgatgcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatcttattttaa 39712526  T
Q  310 gagatta 316  Q
    |||||||    
T  39712525 gagatta 39712519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 11528433 - 11528147
Alignment:
Q  10 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggcttt 109  Q
    |||||| ||||||||||| ||||| ||||||| ||||||  | | |||| ||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  11528433 aagaaactaatcaccttgttccaacattaacaaacaaaaacaagtttgatgata---ataacattgaaaatgacacattcattcttccattgttggcttt 11528337  T
Q  110 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 209  Q
    ||||||| ||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| ||  |||||| |||||||||||||||||||||||    
T  11528336 gcaagtcacagtttttcccgaccatggtctttgcattggcatcacatattgtcacgtgatggatgatagaagttgcgatcatttcatgaaatcttggtct 11528237  T
Q  210 tttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggat 299  Q
    |||||||||||| ||||||| | || ||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  11528236 tttatccatcaaagaggtgatgtagttgaattgaaatcactaccttgttttgacagagaagttttgagggacccaagaggacttgaggat 11528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 28166684 - 28166469
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  28166684 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 28166585  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || ||||||||||||| ||||||||||||| |||    
T  28166584 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcattaccttgttttgacaga 28166485  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  28166484 gaagttttgagggacc 28166469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 44905529 - 44905314
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  44905529 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 44905430  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||||||||| |||||||||| |||    
T  44905429 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactatcttgttttgacaga 44905330  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  44905329 gaagttttgagggacc 44905314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 37952509 - 37952690
Alignment:
Q  94 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 193  Q
    |||| |||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||| | ||||||||| |||||||||| |||| |||||||||||||    
T  37952509 ttccgttgttgtctttgcaagtcacggttttccccaaccatggtctttgcattgccatcaaatattgccatgtgatggatgataactgttgcaatcattt 37952608  T
Q  194 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttg 275  Q
     |||||||||||||||||||||||||    |||||| | || ||| || ||||| | |||||||||||| ||| ||||||||    
T  37952609 aatgaaatcttggtcttttatccatcgtaaaggtgatgtagttgacttcaagtcgcaaccttgttttgacagacaagttttg 37952690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 316
Target Start/End: Complemental strand, 37896966 - 37896715
Alignment:
Q  65 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 164  Q
    |||| ||||||||||| ||||||||| | | || ||||||||||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37896966 taatgacattgaaaataacacattcattttccctttgttggctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37896867  T
Q  165 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgata 264  Q
    || ||||||| ||   |||| | ||||||||||||||||||||||||||| |||  |    |||||| || ||| |||||||||  ||||||||||||||    
T  37896866 gtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgata 37896767  T
Q  265 gagaagttttgaaggaccctagaggacttgaggatcttattttaagagatta 316  Q
    || || |||| | |||||| | ||| |||||  || || | |||||||||||    
T  37896766 gaaaaatttttagggacccaaaagggcttgaaaatgttttcttaagagatta 37896715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 37958224 - 37958442
Alignment:
Q  65 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 164  Q
    |||| ||||||| ||| ||||||||| | | || |||||| |||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37958224 taatgacattgagaataacacattcattttccctttgttgtctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37958323  T
Q  165 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgata 264  Q
    || ||||||| ||   |||| | |||||||||||| |||||||||||||| |||  |    |||||| || ||| |||||||||   |||||||||||||    
T  37958324 gtaatggatgatagttgttgtagtcatttcatgaagtcttggtcttttatacatagaaattgtgaagtagttgacttgaagtcaactccttgttttgata 37958423  T
Q  265 gagaagttttgaaggaccc 283  Q
    || |  |||||| ||||||    
T  37958424 gaaattttttgagggaccc 37958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 38757665 - 38757450
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| ||| |    
T  38757665 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgacacat 38757566  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||| |||    
T  38757565 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaga 38757466  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  38757465 gaagttttgagggacc 38757450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 282
Target Start/End: Original strand, 11149048 - 11149263
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||| |    
T  11149048 ataacattgaaaatgacacattcatccttccgttgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacat 11149147  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||| ||||||||||||||||||||    
T  11149148 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagacactaccttgttttgataga 11149247  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  11149248 gaagttttgagggacc 11149263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 34539147 - 34538932
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| | |||    
T  34539147 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgtcccgt 34539048  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||  | | || ||||||||||||||||||||||||||| | |    
T  34539047 gatggatgataatagttgcaatcatttcatgaaatattgatcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaaa 34538948  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  34538947 gaagttttgagggacc 34538932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 67 - 282
Target Start/End: Original strand, 13228303 - 13228518
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||||| |||||||||   |||||||| ||||||||||||| ||||||||||||||    
T  13228303 ataacattgaaaatgacacaatcatccttccattgttagctttgcaagtcacagtttttcttgaccatggtatttgcattggcatcacatattgccacgt 13228402  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||  | | || ||||||||||||||||||||||||||| |||    
T  13228403 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccataaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaga 13228502  T
Q  267 gaagttttgaaggacc 282  Q
    |||||||||| |||||    
T  13228503 gaagttttgagggacc 13228518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 67 - 274
Target Start/End: Complemental strand, 40768635 - 40768428
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  40768635 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctaaccatggtatttgcattggcatcacatattgccacgt 40768536  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||   | | || | ||||||||||||| ||||||||||| |||    
T  40768535 gatggatgataatagttgcaatcattttatgaaatcttggtcttttatccatcaaggagaaaatgtagttaaattgaagtcactgccttgttttgacaga 40768436  T
Q  267 gaagtttt 274  Q
    ||||||||    
T  40768435 gaagtttt 40768428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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