View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_low_2 (Length: 659)
Name: NF3526_low_2
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 345 - 644
Target Start/End: Complemental strand, 27623185 - 27622880
Alignment:
| Q |
345 |
gaggttttgatagaacaatgtagcttttgtttagagtttctgtacctgtgaacttctaaggcaacagattcagggtctggatgttgaccagggagagtga |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27623185 |
gaggttttgatagaacaatgtagcttttgttaagagtttttgtacctgtgaacttctaaggcaacagattcagggtctggatgttgaccagggagtgtga |
27623086 |
T |
|
| Q |
445 |
ggttaagcattgatgttccatggttgaaaaaggagcaaagtagtgagattaggaaaatgcaggttgtttggaacattgttgatgaagggaaagttttctt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623085 |
ggttaagcattgatgttccatggttgaaaaaggagcaaagtagtgagattaggaaaatgcaggttgtttggaacattgttgatgaagggaaagttttctt |
27622986 |
T |
|
| Q |
545 |
tcacactgctgagtgctagctcttgctactgctattactagtactacagcagagttcactctctcactaact------ctctccactagtgtatgggtaa |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
27622985 |
tcacactgctgagtgctagctcttgctactgctattactagtactacagcagagttcactctctcactcactcactcactctccactagtggatgggtaa |
27622886 |
T |
|
| Q |
639 |
gtaagt |
644 |
Q |
| |
|
|||||| |
|
|
| T |
27622885 |
gtaagt |
27622880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 27623372 - 27623248
Alignment:
| Q |
159 |
atttttatgacccagatctaccctttttccttacttgttttatgtaatgtagggtctcaaagattataaagaaaatgaagagagnnnnnnnngacacaag |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27623372 |
atttttatgacccagatctaccctttttccttacttgttttatgtaatgtagggtctcaaagattataaagaaaatgaagagagaaaaaaaagacacaag |
27623273 |
T |
|
| Q |
259 |
tgagttttgttattctttttgcatc |
283 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27623272 |
tgagttttgttattctttttgcatc |
27623248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 27623518 - 27623484
Alignment:
| Q |
16 |
atgaaatttctaaatgaccctaaaaatgacttttt |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623518 |
atgaaatttctaaatgaccctaaaaatgacttttt |
27623484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University