View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_21 (Length: 342)
Name: NF3526_low_21
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 1552845 - 1553170
Alignment:
| Q |
1 |
tacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcacagtggagtggaac |
100 |
Q |
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| T |
1552845 |
tacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcacagtggagtggaac |
1552944 |
T |
|
| Q |
101 |
atagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaagatttcttgttta |
200 |
Q |
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| T |
1552945 |
atagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaagatttcttgttta |
1553044 |
T |
|
| Q |
201 |
gatttcattgtcctacttggccttctatgaaaaccccttcagattctcacacacactcataaaatactctctaactagttcagttcagttcccaagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1553045 |
gatttcattgtcctacttggccttctatgaaaaccccttcagattctctcacacactcataaaatactctctaactagttcagttcaattcccaagtgaa |
1553144 |
T |
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| Q |
301 |
ctacaaaaccagtctcattactcttt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1553145 |
ctacaaaaccagtctcattactcttt |
1553170 |
T |
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