View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_23 (Length: 336)
Name: NF3526_low_23
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 49734645 - 49734340
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734645 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
49734546 |
T |
|
| Q |
118 |
ttagcagtttgcagcaggtaaataaatacacacaatctatgataaataccaactcaaatacaaacatcggacacgatagtgacactattacgtaaacact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49734545 |
ttagcagtttgcagcaggtaaataaatacacacaatctatgataaataccaactcaaatacaaacatcggacacgatagtgacactaatacgtaaacact |
49734446 |
T |
|
| Q |
218 |
cttgtaatagtttaagaaattaaagtgattgaatgtaaccatgttggtgtcagacactacacatgtcactaaacacgtcatcgatctgaagtcatattca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734445 |
cttgtaatagtttaagaaattaaagtgattgaatgtaaccatgtcggtgtcagacactacacatgtcactaaacacgtcatcgatctgaagtcatattca |
49734346 |
T |
|
| Q |
318 |
atgtct |
323 |
Q |
| |
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|||||| |
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| T |
49734345 |
atgtct |
49734340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 36288784 - 36288842
Alignment:
| Q |
84 |
gctgcagcaaaacttgcaaatgctcataagttcattagcagtttgcagcaggtaaataa |
142 |
Q |
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|||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
36288784 |
gctgcagcaaaaatggcaaatgctcacaagttcattagtagtttgcagcaggtaaataa |
36288842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 51215373 - 51215494
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
| |
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||||||||| | |||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| |
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| T |
51215373 |
aatgacaccatcagagctaacattgcctatggaaaaggtggtaatgcaactgaggctgaagttatagctgcagcagaactagcaaatgctcataacttca |
51215472 |
T |
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| Q |
118 |
ttagcagtttgcagcaggtaaa |
139 |
Q |
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|||| ||||||||||||||||| |
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| T |
51215473 |
ttagtagtttgcagcaggtaaa |
51215494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 51159711 - 51159833
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
| |
|
|||||||| || |||||||| ||||| || |||||||| || ||||||| ||||| |||||| ||||||| ||| |||| ||||||||||| |||||| |
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| T |
51159711 |
aatgacacggttcgagccaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttca |
51159810 |
T |
|
| Q |
118 |
ttagcagtttgcagcaggtaaat |
140 |
Q |
| |
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|| | ||||||||| |||||||| |
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| T |
51159811 |
ttggtagtttgcagaaggtaaat |
51159833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 29934315 - 29934193
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
| |
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|||||||| || |||||||| ||||| || |||||||| || ||||||| || || |||||| |||| || ||| |||| ||||||||||| |||||| |
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| T |
29934315 |
aatgacacagtccgagccaatattgcatacggaaaaggaggagatgcaacagaagcagaaattgtagccgcggcagaactagcaaatgctcaccagttca |
29934216 |
T |
|
| Q |
118 |
ttagcagtttgcagcaggtaaat |
140 |
Q |
| |
|
|||| ||||||||| |||||||| |
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|
| T |
29934215 |
ttagtagtttgcagaaggtaaat |
29934193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 51148820 - 51148942
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
| |
|
|||||||| || || || || ||||| || |||||||| || ||||||| ||||| |||||| ||||||| ||| |||| ||||||||||| |||||| |
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| T |
51148820 |
aatgacacggttcgggcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttca |
51148919 |
T |
|
| Q |
118 |
ttagcagtttgcagcaggtaaat |
140 |
Q |
| |
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|| | ||||||||| |||||||| |
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| T |
51148920 |
ttggtagtttgcagaaggtaaat |
51148942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 51202319 - 51202431
Alignment:
| Q |
18 |
aatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttca |
117 |
Q |
| |
|
||||||||| | ||||||| ||||| ||||| ||||| || ||||| | ||||| || ||||||||||||||| || | ||||||||||| ||||| | |
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| T |
51202319 |
aatgacaccatcagagccaatattgcatatggtaaaggaggagatgcatcagaggcagagattatagctgcagcagaattagcaaatgctcacaagttta |
51202418 |
T |
|
| Q |
118 |
ttagcagtttgca |
130 |
Q |
| |
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|||| |||||||| |
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| T |
51202419 |
ttagtagtttgca |
51202431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 32754616 - 32754657
Alignment:
| Q |
218 |
cttgtaatagtttaagaaatt-aaagtgattgaatgtaacca |
258 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||| |
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| T |
32754616 |
cttgtaatagtttaagaaaatgaaagtgattgaatgtaacca |
32754657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 38539933 - 38539879
Alignment:
| Q |
34 |
ccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgc |
88 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
38539933 |
ccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgc |
38539879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 38562151 - 38562097
Alignment:
| Q |
34 |
ccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgc |
88 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |
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|
| T |
38562151 |
ccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgc |
38562097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 38522779 - 38522694
Alignment:
| Q |
33 |
gccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttcat |
118 |
Q |
| |
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||||| ||||| ||||| |||||||||| |||||||||||| ||||| || ||||| || || | || |||||||||| |||||| |
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| T |
38522779 |
gccaatattgcttatggcaaaggtggcattgcaactgaggcagaaatcattgctgctgctgaattggctaatgctcataggttcat |
38522694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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